Characinae (Actinopterygii: Characiformes: Characidae): molecular identification and interspecific phylogenetic relationships

• Grant number: 17/06551-0
• Support Opportunities: Scholarships in Brazil - Doctorate
• Start date: July 01, 2018
• End date: February 28, 2022
• Field of knowledge: Biological Sciences - Zoology - Taxonomy of Recent Groups
• Principal Investigator: Claudio de Oliveira
• Grantee: Camila da Silva de Souza
• Host Institution: Instituto de Biociências (IBB). Universidade Estadual Paulista (UNESP). Campus de Botucatu. Botucatu , SP, Brazil
• Associated scholarship(s): 19/04602-1 - Evolution and ecomorphology of the subfamily Characinae (Actinopterygii: Characiformes: Characidae), BE.EP.DR

Abstract

Characinae is one of the most speciose subfamilies of Characidae and widely distributed throughout South and Central America. The subfamily contains small to medium-sized species that adopt distinct feeding strategies as carnivory, omnivory and lepidophagy. Phylogenetic relationships within the Characinae and with other subfamilies have been subject of a few morphological studies, although none hypothesis included a representative number of Characinae species using either morphological or molecular characters. Furthermore, the proposed hypotheses still present inconsistencies at intergeneric and interspecific levels. Thus, the present proposal, which belongs to a large phylogenetic and evolutionary study of the order Characiformes, aims to test hypotheses of phylogenetic relationships among species and among genera of Characinae, to test relationship hypothesis of Characidae with other subfamilies of the Characidae, and to construct a genetic database for molecular species identification. To infer phylogenetic relationships, we will use next-gen sequencing of roughly 2000 loci of Ultraconserved Elements (UCEs), orthologous nuclear markers highly efficient for phylogenetic studies. For molecular identification, we will use Sanger sequencing to construct a DNA barcoding database through cytochrome oxidase c subunit I gene. Results should contribute to expand our current knowledge on the diversity, phylogeny and evolutionary processes involved in the diversification of species of Characinae, one of the largest subclades of the Characidae. (AU)

Scientific publications

(7)

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

LUZ E. OCHOA; BRUNO F. MELO; JORGE E. GARCÍA-MELO; JAVIER A. MALDONADO-OCAMPO; CAMILA S. SOUZA; JUAN G. ALBORNOZ-GARZÓN; CRISTHIAN C. CONDE-SALDAÑA; FRANCISCO VILLA-NAVARRO; ARMANDO ORTEGA-LARA; CLAUDIO OLIVEIRA. Species delimitation reveals an underestimated diversity of Andean catfishes of the family Astroblepidae (Teleostei: Siluriformes). Neotropical Ichthyology, v. 18, n. 4, 2020-12-04. (14/06853-8, 16/19075-9, 18/23883-9, 16/11313-8, 17/06551-0, 18/09767-6, 14/26508-3)

SOUZA, CAMILA S.; SILVA, GABRIEL S. C.; OCHOA, LUZ E.; ROXO, FABIO F.; COSTA-SILVA, GUILHERME J.; FORESTI, FAUSTO; MELO, BRUNO F.; OLIVEIRA, CLAUDIO. Molecular and morphological diversity in species of Kronichthys (Teleostei, Loricariidae) from Atlantic coastal rivers of Brazil. Journal of Fish Biology, v. 98, n. 3, DEC 2020. (18/23883-9, 17/06551-0, 14/26508-3, 16/11313-8)

MATTOX, GEORGE M. T.; SOUZA, CAMILA S.; TOLEDO-PIZA, MONICA; BRITZ, RALF; OLIVEIRA, CLAUDIO. A new miniature species of Priocharax (Teleostei: Characiformes: Characidae) from the Rio Madeira drainage, Brazil, with comments on the adipose fin in characiforms. VERTEBRATE ZOOLOGY, v. 70, n. 3, p. 17-pg., 2020-01-01. (16/09204-6, 14/26508-3, 17/01970-4, 18/20610-1, 17/06551-0)

SOUZA, CAMILA S.; MATTOX, GEORGE M. T.; VITA, GEORGE; OCHOA, LUZ E.; MELO, BRUNO F.; OLIVEIRA, CLAUDIO. Molecular species delimitation and description of a new species of Phenacogaster (Teleostei, Characidae) from the southern Amazon basin. ZOOKEYS, v. N/A, n. 1164, p. 21-pg., 2023-05-26. (16/09204-6, 18/20610-1, 14/26508-3, 17/01970-4, 17/06551-0, 18/23883-9, 16/11313-8)

SOUZA, CAMILA S.; MELO, BRUNO F.; MATTOX, GEORGE M. T.; OLIVEIRA, CLAUDIO. Phylogenomic analysis of the Neotropical fish subfamily Characinae using ultraconserved elements (Teleostei: Characidae). Molecular Phylogenetics and Evolution, v. 171, p. 11-pg., 2022-04-04. (17/01970-4, 16/09204-6, 19/04602-1, 18/23883-9, 18/20610-1, 14/26508-3, 16/11313-8, 17/06551-0)

MELO, BRUNO F.; OTA, RAFAELA P.; BENINE, RICARDO C.; CARVALHO, FERNANDO R.; LIMA, FLAVIO C. T.; MATTOX, GEORGE M. T.; SOUZA, CAMILA S.; FARIA, TIAGO C.; REIA, LAIS; ROXO, FABIO F.; et al. Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes). ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, v. 202, n. 1, p. 37-pg., 2024-09-03. (17/06551-0, 12/03404-2, 20/13433-6, 11/11422-8, 16/11313-8, 17/01970-4, 21/00242-0, 14/26508-3)

MATTOX, GEORGE M. T.; LIMA, FLAVIO C. T.; BRITZ, RALF; SOUZA, CAMILA S.; OLIVEIRA, CLAUDIO. Two new miniature species of the fish genus Priocharax from the Rio Tapajos and Amazonas drainages, Para, Brazil (Teleostei: Characiformes: Characidae). VERTEBRATE ZOOLOGY, v. 74, p. 18-pg., 2024-09-12. (17/01970-4, 17/06551-0, 20/13433-6)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

SOUZA, Camila da Silva de. Molecular identification and Phylogenomic analysis of Characinae (Actinopterygii: Characiformes: Characidae). 2022. Doctoral Thesis - Universidade Estadual Paulista (Unesp). Instituto de Biociências. Botucatu Botucatu.