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A comprehensive investigation of the interrelationship between retrocopies and cancer

Grant number: 24/00078-4
Support Opportunities:Scholarships in Brazil - Post-Doctoral
Start date: May 01, 2024
End date: April 30, 2025
Field of knowledge:Biological Sciences - Genetics - Human and Medical Genetics
Principal Investigator:Pedro Alexandre Favoretto Galante
Grantee:Helena Beatriz da Conceição
Host Institution: Hospital Sírio-Libanês. Sociedade Beneficente de Senhoras (SBSHSL). São Paulo , SP, Brazil
Associated research grant:18/15579-8 - Retroelements: a driving force generating genetic novelties in the human and mouse genome, AP.JP2

Abstract

It is well known that malignant tumors exhibit an altered pattern of gene expression, with several genes being overexpressed or underexpressed. Our group and others have identified expressed retrocopies capable of regulating the expression of their parental protein-coding genes or genes neighboring the insertion site. Here, we hypothesize that retrocopies without a known function may play a functional role in tumors. In this project, we will systematically identify and analyze fixed and polymorphic retrocopies (restricted to humans) with altered functional characteristics in tumors. Specifically, we will analyze those retrocopies that are transcribed differently, forming gene chimeras, undergoing mutations, or potentially disrupting the genomic regions in which they are inserted. Overall, the aim is to identify specific or significantly altered phenomena in tumors.

News published in Agência FAPESP Newsletter about the scholarship:
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Scientific publications
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
CONCEICAO, HELENA B.; MERCURI, RAFAEL L., V; DE CASTRO, MATHEUS P. M.; OHARA, DANIEL T.; GUARDIA, GABRIELA D. A.; GALANTE, PEDRO A. F.. RCPedia: a global resource for studying and exploring retrocopies in diverse species. Bioinformatics, v. 40, n. 9, p. 5-pg., . (24/00078-4, 18/15579-8, 20/02413-4, 18/13613-4, 17/19541-2)