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(Reference retrieved automatically from SciELO through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

Evaluation of three methods of DNA extraction from paraffin-embedded material for the amplification of genomic DNA by means of the PCR technique

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Author(s):
Ricardo Alves MESQUITA [1] ; Evelyn K. ANZAI [2] ; Rogério Nogueira OLIVEIRA [3] ; Fábio Daumas NUNES [4]
Total Authors: 4
Affiliation:
[1] Universidade de São Paulo. Faculdade de Odontologia
[2] Universidade de São Paulo. Faculdade de Odontologia
[3] Universidade de São Paulo. Faculdade de Odontologia
[4] Universidade de São Paulo. Faculdade de Odontologia
Total Affiliations: 4
Document type: Journal article
Source: Pesquisa Odontológica Brasileira; v. 15, n. 4, p. 314-318, 2001-12-00.
Abstract

There are several protocols reported in the literature for the extraction of genomic DNA from formalin-fixed paraffin-embedded samples. Genomic DNA is utilized in molecular analyses, including PCR. This study compares three different methods for the extraction of genomic DNA from formalin-fixed paraffin-embedded (inflammatory fibrous hyperplasia) and non-formalin-fixed (normal oral mucosa) samples: phenol with enzymatic digestion, and silica with and without enzymatic digestion. The amplification of DNA by means of the PCR technique was carried out with primers for the exon 7 of human keratin type 14. Amplicons were analyzed by means of electrophoresis in an 8% polyacrylamide gel with 5% glycerol, followed by silver-staining visualization. The phenol/enzymatic digestion and the silica/enzymatic digestion methods provided amplicons from both tissue samples. The method described is a potential aid in the establishment of the histopathologic diagnosis and in retrospective studies with archival paraffin-embedded samples. (AU)