| Full text | |
| Author(s): |
Camilo, Esther
[1]
;
Bovolenta, Luiz A.
[1]
;
Acencio, Marcio L.
[1]
;
Rybarczyk-Filho, Jose L.
[1]
;
Castro, Mauro A. A.
[2]
;
Moreira, Jose C. F.
[2]
;
Lemke, Ney
[1]
Total Authors: 7
|
| Affiliation: | [1] UNESP Univ Estadual Paulista, Inst Biosci, Dept Phys & Biophys, Sao Paulo - Brazil
[2] Univ Fed Rio Grande do Sul, Inst Basic Sci & Hlth, Porto Alegre, RS - Brazil
Total Affiliations: 2
|
| Document type: | Journal article |
| Source: | Bioinformatics; v. 29, n. 19, p. 2505-2506, OCT 1 2013. |
| Web of Science Citations: | 3 |
| Abstract | |
Network-level visualization of functional data is a key aspect of both analysis and understanding of biological systems. In a continuing effort to create clear and integrated visualizations that facilitate the gathering of novel biological insights despite the overwhelming complexity of data, we present here the GrAph LANdscape VisualizaTion (GALANT), a Cytoscape plugin that builds functional landscapes onto biological networks. By using GALANT, it is possible to project any type of numerical data onto a network to create a smoothed data map resembling the network layout. As a Cytoscape plugin, GALANT is further improved by the functionalities of Cytoscape, the popular bioinformatics package for biological network visualization and data integration. (AU) | |
| FAPESP's process: | 13/02018-4 - Machine learning for molecular systems biology (MLMSB) application on synthetic lethality, conditionally essential genes and cooperative transcription |
| Grantee: | Ney Lemke |
| Support Opportunities: | Regular Research Grants |
| FAPESP's process: | 12/00741-8 - Prediction of Escherichia coli phenotypes through biological networks and machine learning |
| Grantee: | Esther Camilo dos Reis |
| Support Opportunities: | Scholarships in Brazil - Doctorate |
| FAPESP's process: | 10/20684-3 - Development of machine learning approaches based on biological networks for prediction and determination of rules governing the emergence of phenotypes of interest |
| Grantee: | Marcio Luis Acencio |
| Support Opportunities: | Scholarships in Brazil - Post-Doctoral |
| FAPESP's process: | 12/13450-1 - Large scale exploratory analysis of Nile tilapia's miRNA expression using bioinformatics tools. |
| Grantee: | Luiz Augusto Bovolenta |
| Support Opportunities: | Scholarships in Brazil - Doctorate |