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Genetic diversity, genomics and phylogeography of manioc (Manihot esculenta Crantz): implications for the dispersion and diffusion of the crop along the main fluvial axes in Brazilian Amazon Basin

Grant number: 13/00003-0
Support Opportunities:Regular Research Grants
Duration: June 01, 2013 - May 31, 2015
Field of knowledge:Biological Sciences - Genetics - Plant Genetics
Principal Investigator:Maria Imaculada Zucchi
Grantee:Maria Imaculada Zucchi
Host Institution: Agência Paulista de Tecnologia dos Agronegócios (APTA). Secretaria de Agricultura e Abastecimento (São Paulo - Estado). Campinas , SP, Brazil
Associated researchers: Charles Roland Clement ; Doriane Picanço Rodrigues ; Elizabeth Ann Veasey ; José Baldin Pinheiro


Manioc (Manihot esculenta ssp. esculenta Crantz) was domesticated in the southwestern Amazon basin and currently is the main source of calories for more than 800 million people in the world. After its initial domestication, divergent selective pressures gave rise to two major groups of varieties (sweet and bitter manioc), which differ in their contents of toxic compounds. Although there is some overlap, these groups of varieties have distinct patterns of distribution, which may be the outcome of limited processes of contact and interchange between varieties along the crop's domestication history. The evolutionary history of a crop may be better understood by studying the organization of genetic diversity within and between its domesticated populations. Few studies evaluated how the genetic diversity of manioc is organized across its geographic distribution, and there are no genomic population studies with manioc varieties. The main goal of this proposal is to evaluate, with different molecular markers, the genomic and genetic diversity and structure, and the phylogeography of manioc varieties traditionally grown along the major rivers of Brazilian Amazon basin. The current genetic diversity and structure will be evaluated with nuclear microsatellites markers (ncSSR), while historical patterns of the organization of genetic diversity (phylogeography) will be evaluated with chloroplastidial microsatellites (cpSSR). Novel information on the genomic basis for distinction between sweet and bitter varieties, as well as possible distinct patterns of dispersion, will be generated with SNPs detected with Restriction-site associated DNA sequencing (RAD-seq). We expect to contribute to the understanding of manioc's dispersal across the Amazon basin after its initial domestication, as well as to the understanding of the genomic basis for the differentiation between sweet and bitter manioc. This information may help identify centers of genetic diversity of the crop, which in turn may be useful for the conservation of genetic resources, and also for manioc's breeding programs. (AU)

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Scientific publications (4)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
ALVES-PEREIRA, ALESSANDRO; CLEMENT, CHARLES R.; PICANCO-RODRIGUES, DORIANE; VEASEY, ELIZABETH ANN; DEQUIGIOVANNI, GABRIEL; FERREYRA RAMOS, SANTIAGO LINORIO; PINHEIRO, JOSE BALDIN; DE SOUZA, ANETE PEREIRA; ZUCCHI, MARIA IMACULADA. A population genomics appraisal suggests independent dispersals for bitter and sweet manioc in Brazilian Amazonia. EVOLUTIONARY APPLICATIONS, v. 13, n. 2, . (12/08307-5, 18/00036-9, 13/08884-5, 13/00003-0)
ALVES-PEREIRA, ALESSANDRO; NOVELLO, MARIANA; DEQUIGIOVANNI, GABRIEL; PINHEIRO, JOSE BALDIN; BRANCALION, PEDRO H. S.; VEASEY, ELIZABETH ANN; CLEMENT, CHARLES R.; DE SOUZA, ANETE PEREIRA; ZUCCHI, MARIA IMACULADA. Genomic Diversity of Three Brazilian Native Food Crops Based on Double-Digest Restriction Site-Associated DNA Sequencing. TROPICAL PLANT BIOLOGY, v. 12, n. 4, p. 268-281, . (12/08307-5, 18/00036-9, 13/17354-0, 13/08884-5, 13/00003-0)
ALVES-PEREIRA, ALESSANDRO; CLEMENT, CHARLES R.; PICANCO-RODRIGUES, DORIANE; VEASEY, ELIZABETH A.; DEQUIGIOVANNI, GABRIEL; RAMOS, SANTIAGO L. F.; PINHEIRO, JOSE B.; ZUCCHI, MARIA I.. Patterns of nuclear and chloroplast genetic diversity and structure of manioc along major Brazilian Amazonian rivers. ANNALS OF BOTANY, v. 121, n. 4, p. 625-639, . (13/00003-0, 12/08307-5, 13/11137-7, 13/08884-5)
ALVES-PEREIRA, ALESSANDRO; ZUCCHI, MARIA IMACULADA; CLEMENT, CHARLES R.; GOMES VIANA, JOAO PAULO; PINHEIRO, JOSE BALDIN; VEASEY, ELIZABETH ANN; DE SOUZA, ANETE PEREIRA. elective signatures and high genome-wide diversity in traditional Brazilian manioc (Manihot esculenta Crantz) varietie. SCIENTIFIC REPORTS, v. 12, n. 1, . (12/08307-5, 13/00003-0, 18/00036-9)

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