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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

GHap: an R package for genome-wide haplotyping

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Utsunomiya, Yuri T. ; Milanesi, Marco ; Utsunomiya, Adam T. H. ; Ajmone-Marsan, Paolo ; Garcia, Jose F.
Total Authors: 5
Document type: Journal article
Source: Bioinformatics; v. 32, n. 18, p. 2861-2862, SEP 15 2016.
Web of Science Citations: 7

The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. (AU)

FAPESP's process: 14/01095-8 - Use of next generation sequencing for the fine mapping of loci explaining variance in scrotal circumference in Nellore cattle
Grantee:Yuri Tani Utsunomiya
Support type: Scholarships in Brazil - Doctorate