| Full text | |
| Author(s): |
Utsunomiya, Yuri T.
;
Milanesi, Marco
;
Utsunomiya, Adam T. H.
;
Ajmone-Marsan, Paolo
;
Garcia, Jose F.
Total Authors: 5
|
| Document type: | Journal article |
| Source: | Bioinformatics; v. 32, n. 18, p. 2861-2862, SEP 15 2016. |
| Web of Science Citations: | 7 |
| Abstract | |
The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. (AU) | |
| FAPESP's process: | 14/01095-8 - Use of next generation sequencing for the fine mapping of loci explaining variance in scrotal circumference in Nellore cattle |
| Grantee: | Yuri Tani Utsunomiya |
| Support Opportunities: | Scholarships in Brazil - Doctorate |