Advanced search
Start date
Betweenand
(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

segRDA: An r package for performing piecewise redundancy analysis

Full text
Author(s):
Vieira, Danilo Candido [1, 2] ; Brustolin, Marco Colossi [1, 2, 3] ; Ferreira, Fabio Cop [1] ; Fonseca, Gustavo [1, 2]
Total Authors: 4
Affiliation:
[1] Univ Fed Sao Paulo, Santos - Brazil
[2] Univ Fed Parana, Ctr Estudos Mar, Pontal Do Parana - Brazil
[3] Univ Auckland, Inst Marine Sci, Auckland - New Zealand
Total Affiliations: 3
Document type: Journal article
Source: METHODS IN ECOLOGY AND EVOLUTION; v. 10, n. 12, p. 2189-2194, DEC 2019.
Web of Science Citations: 0
Abstract

Redundancy analysis is widely used to correlate species matrix against environmental descriptors. This analysis assumes that the response variables have the same continuous linear trend over the whole gradient, which is often not the case. To overcome this issue, we propose the piecewise redundancy analysis (pwRDA). The pwRDA allows the relationship between the response and explanatory variables to break into pieces. The breakpoint between communities is assessed by the split-moving-window (SMW) approach. Both analyses are within segRDA package for the R environment. We illustrate the use of segRDA using simulated and empirical examples with a varying degree of discontinuity among communities. SMW results provide consistent estimates for both, number and location of community breakpoints along the gradient. In communities with a sharp transition, the pwRDA models were significantly more informative than the traditional RDA model. For smooth transitions between communities, the pwRDA did not differ from the traditional RDA. The combined use of SMW and pwRDA allows one to identify breakpoints and transition zones among ecological communities along environmental gradients. This approach is particularly relevant when species-habitat associations may differ among communities. (AU)

FAPESP's process: 11/50317-5 - Biodiversity and functioning of a subtropical coastal ecosystem: a contribution to integrated management
Grantee:Antonia Cecília Zacagnini Amaral
Support Opportunities: BIOTA-FAPESP Program - Thematic Grants