Comparison of chemometric models using Raman spectroscopy for offline biochemical monitoring throughout the VLP-making upstream process

Author(s)

Guardalini, Luis Giovani Oliveira ; Dias, Vinicius Aragao Tejo ; Leme, Jaci ; Bernardino, Thaissa Consoni ; Astray, Renato Mancini ; da Silveira, Suellen Regina ; Ho, Paulo Lee ; Tonso, Aldo ; Jorge, Soraia Attie Calil ; Nunez, Eutimio Gustavo Fernandez

• Document type: Journal article
• Source: Biochemical Engineering Journal; v. 198, p. 12-pg., 2023-06-21.

Abstract

This work aimed to compare the predictive capacity of linear (Partial Least Squares; Principal Component Regression) and non-linear (Artificial Neural Network, ANN; Support Vector Machine, SVM) chemometric models from Raman spectroscopy spectra acquired offline with (unclarified samples) and without cells (clarified samples), and biochemical parameters (Viable cell density, cell viability, glucose, lactate, glutamine, glutamate, ammonium, and potassium) quantified by reference methods in a rabies VLP production bioprocess. The nonlinear models, ANN and SVM were the more suitable models with the lowest absolute errors. No effective differences in accuracy were detected for models from spectral data with and without cells. The mean absolute error of the best models within the assessed parameter ranges for viable cell density (0.01-8.83 x 106 cells/mL), cell viability (1.3-100.0%), glucose (5.22-10.93 g L-1), lactate (18.6-152.7 mg L-1), glutamine (158-1761 mg L-1), glutamate (807.6-2159.7 mg L-1), ammonium (62.8-117.8 mg L-1), and potassium (531.6-685. 3 mg L-1) were 0.17 & PLUSMN; 0.13 x 106 cells/mL, 6.8 & PLUSMN; 7.1%, 0.24 & PLUSMN; 0.14 gL- 1, 3.3 & PLUSMN; 3.5 mgL- 1, 61 & PLUSMN; 52 mgL- 1, 52 & PLUSMN; 51 mg L- 1, 2.1 & PLUSMN; 1.9 mg L- 1 and 8.6 & PLUSMN; 8.6 mg L- 1, respectively. The errors achieved were like those for bioprocesses using a highlighted animal cell host (CHO cell) in similar ranges. (AU)

• FAPESP's process: 18/10538-1 - Characterization of recombinant antigens and immune response of a new rabies vaccine candidate
• Grantee: Renato Mancini Astray
• Support Opportunities: Regular Research Grants
• FAPESP's process: 22/02713-3 - Establishment of scalable bioprocesses for producing virus-like particles
• Grantee: Eutimio Gustavo Fernández Núñez
• Support Opportunities: Research Grants - Initial Project
• FAPESP's process: 22/04711-8 - Off-line monitoring of the rabies VLP production bioprocess by Raman spectroscopy
• Grantee: Vinícius Aragão Tejo Dias
• Support Opportunities: Scholarships in Brazil - Scientific Initiation
• FAPESP's process: 16/22780-6 - Arboviruses VLP production in insect cells.
• Grantee: Soraia Attie Calil Jorge
• Support Opportunities: Regular Research Grants