External validation and interpretability of machine learning-based risk prediction for major adverse cardiovascular events

Author(s)

Shimizu, Gilson Yuuji ; Romao, Elen Almeida ; Cardeal da Costa, Jose Abrao ; Mazzoncini de Azevedo-Marques, Joao ; Scarpelini, Sandro ; Firmino Suzuki, Katia Mitiko ; Cesar, Hilton Vicente ; Azevedo-Marques, Paulo M.

• Document type: Journal article
• Source: 2024 IEEE 37TH INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS, CBMS 2024; v. N/A, p. 6-pg., 2024-01-01.

Abstract

Studies of cardiovascular disease risk prediction by machine learning algorithms often do not assess their ability to generalize to other populations and few of them include an analysis of the interpretability of individual predictions. This manuscript addresses the development and internal and external validation of predictive models for the assessment of risks of major adverse cardiovascular events. Global and local interpretability analyses of predictions were conducted towards improving model reliability and tailoring preventive interventions. The models were trained and validated in a retrospective cohort with the use of data from Hospital das Clinicas da Faculdade de Medicina de Ribeirao Preto, Brazil. Data from Beth Israel Deaconess Medical Center, USA, were used for external validation. Eight machine learning algorithms, namely Penalized Logistic Regression, Random Forest, XGBoost, Decision Tree, Support Vector Machine, k-Nearest Neighbors, Naive Bayes and Multi-Layer Perceptron were trained to predict a 5-year risk of major adverse cardiovascular events and their predictive performance was evaluated regarding accuracy, ROC curve (receiver operating characteristic), and AUC (area under the ROC curve). LIME and Shapley values methods interpreted individual predictions. Random Forest showed the best predictive performance in both internal validation (AUC = 0.87; Accuracy = 0.79) and external one (AUC = 0.79; Accuracy = 0.71). Compared to LIME, Shapley values provided explanations more consistent with exploratory analysis and importance of features. Among the machine learning algorithms evaluated, Random Forest showed the best generalization ability, both internally and externally, and Shapley values for local interpretability were more informative than LIME ones, which is in line with our exploratory analysis and global interpretation of the final model. Machine learning algorithms with good generalization and accompanied by interpretability analyses are recommended for assessments of individual risks of cardiovascular diseases and development of personalized preventive actions. (AU)

• FAPESP's process: 14/50889-7 - National Institute of Science and Technology Medicine Assisted by Scientific Computing (INCT-MACC)
• Grantee: José Eduardo Krieger
• Support Opportunities: Research Projects - Thematic Grants
• FAPESP's process: 21/06137-4 - Predicting cardiovascular events using machine learning
• Grantee: Paulo Mazzoncini de Azevedo Marques
• Support Opportunities: Regular Research Grants
• FAPESP's process: 22/16683-9 - Federated learning for validating machine learning models trained in different hospital networks
• Grantee: Gilson Yuuji Shimizu
• Support Opportunities: Scholarships in Brazil - Post-Doctoral
• FAPESP's process: 23/01695-4 - Validation and improvement of machine learning models for predicting cardiovascular events
• Grantee: Hilton Vicente César
• Support Opportunities: Scholarships in Brazil - Technical Training Program - Technical Training