From interacting particle systems to topological data analysis

• Grant number: 17/20696-0
• Support Opportunities: Research Grants - Visiting Researcher Grant - International
• Start date: February 14, 2018
• End date: June 28, 2019
• Field of knowledge: Physical Sciences and Mathematics - Probability and Statistics - Applied Probability and Statistics
• Principal Investigator: Vladimir Belitsky
• Grantee: Vladimir Belitsky
• Visiting researcher: Gunter Markus Schutz
• Visiting researcher institution: Forschungszentrum Jülich , Germany
• Host Institution: Instituto de Matemática e Estatística (IME). Universidade de São Paulo (USP). São Paulo , SP, Brazil
• City of the host institution: São Paulo

Abstract

We first study duality in stochastic interacting particle systems. In contrast to previous work the main emphasis will be on particle systems with non-conserved internal degrees of freedom. Starting from the known symmetries of the intensity matrix, probabilistic, algebraic and combinatorial techniques will be employed to construct invariant measures, duality functions and shock measures, with a view alsoon a generalization of the second-class particle technique to mark the microscopic position of shocks. For the bricklayers' process we devise a reversed route starting from shock measuresin order to uncover duality functions and the underlying symmetry. Then we go on to use expertise from non-reversible interacting particle systems to tackle convergence problems in persistent homology as used in the framework of topological data analysis. The idea is to use the superparamagnetic clustering to devise a non-reversible Markov chain that allows for the numerical computation of persistent homology and that exhibits fast convergence to a givenmeasure on ensembles of simplicial complexes that are relevant for topological data analysis.The efficiency of this algorithm will be tested numerically on data sets with known topological properties. Moreover, it will be investigated whether there universal asymptotic properties of random null models that can serve for benchmarking purposes in the distinction of relevant information from noise. (AU)

Scientific publications

(10)

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

DUTTA, ANNWESHA; SCHUETZ, GUNTER M.; CHOWDHURY, DEBASHISH. Stochastic thermodynamics and modes of operation of a ribosome: A network theoretic perspective. Physical Review E, v. 101, n. 3, MAR 3 2020. (17/20696-0)

BELITSKY, V; SCHUETZ, G. M.. Duality, supersymmetry and non-conservative random walks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, MAY 2019. (17/20696-0, 17/10555-0)

PECHERSKY, E.; PIROGOV, S.; SCHUETZ, G. M.; VLADIMIROV, A.; YAMBARTSEV, A.. LARGE EMISSION REGIME IN MEAN FIELD LUMINESCENCE. MOSCOW MATHEMATICAL JOURNAL, v. 19, n. 1, p. 107-120, JAN-MAR 2019. (17/20696-0, 17/10555-0)

BELITSKY, V.; SCHUETZ, G. M.. RNA Polymerase interactions and elongation rate. Journal of Theoretical Biology, v. 462, p. 370-380, FEB 7 2019. (17/20696-0, 17/10555-0)

DUTTA, ANNWESHA; SCHUETZ, GUNTER M.; CHOWDHURY, DEBASHISH. Stochastic thermodynamics and modes of operation of a ribosome: A network theoretic perspective. PHYSICAL REVIEW E, v. 101, n. 3, p. 28-pg., 2020-03-03. (17/20696-0)

BELITSKY, V; SCHUETZ, G. M.. Duality, supersymmetry and non-conservative random walks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 17-pg., 2019-05-01. (17/20696-0, 17/10555-0)

SCHUETZ, G. M.. Duality from integrability: annihilating random walks with pair deposition. Journal of Physics A-Mathematical and Theoretical, v. 53, n. 35, SEP 4 2020. (17/20696-0, 17/10555-0)

BELITSKY, V; SCHUETZ, G. M.. Stationary RNA polymerase fluctuations during transcription elongation. Physical Review E, v. 99, n. 1, JAN 7 2019. (17/20696-0, 17/10555-0)

SCHUETZ, G. M.. On the stationary frequency of programmed ribosomal-1 frameshift. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. 2020, n. 4, APR 2020. (17/20696-0, 17/10555-0)

BELITSKY, V; SCHUETZ, G. M.. Stationary RNA polymerase fluctuations during transcription elongation. PHYSICAL REVIEW E, v. 99, n. 1, p. 10-pg., 2019-01-07. (17/20696-0, 17/10555-0)