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João Carlos Setubal

CV Lattes GoogleMyCitations ResearcherID ORCID


Universidade de São Paulo (USP). Instituto de Química (IQ)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

Full Professor in the Biochemistry Department of the Chemistry Institute of the University of Sao Paulo; Adjunct Faculty at the Biocomplexity Institute of Virginia Tech (USA). PhD in Computer Science, University of Washington (1992). Research interests: bioinformatics and computational biology, primarily in genomics, metagenomics, and transcriptomics. (Source: Lattes Curriculum)

Research grants
Scholarships in Brazil
Scholarships abroad
FAPESP support in numbers*
*Updated June 15, 2019
Most frequent collaborators in research granted by FAPESP
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Use this Research Supported by FAPESP (BV/FAPESP) channel only to send messages referring to FAPESP-funded scientific projects.


 

 

 

 

Keywords used by the researcher
Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (16)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Publications15
Citations83
Cit./Article5.5
Data from Web of Science

PUIGVERT, MARINA; GUARISCHI-SOUSA, RODRIGO; ZULUAGA, PAOLA; COLL, NURIA S.; MACHO, ALBERTO P.; SETUBAL, JOAO C.; VALLS, MARC. Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii. FRONTIERS IN PLANT SCIENCE, v. 8, . Web of Science Citations: 4. (12/15197-1)

ANTUNES, LUCIANA PRINCIPAL; MARTINS, LAYLA FARAGE; PEREIRA, ROBERTA VERCIANO; THOMAS, ANDREW MALTEZ; BARBOSA, DEIBS; LEMOS, LEANDRO NASCIMENTO; MACHADO SILVA, GIANLUCA MAJOR; SILVA MOURA, LIVIA MARIA; CONDOMITTI EPAMINO, GEORGE WILLIAN; DIGIAMPIETRI, LUCIANO ANTONIO; et al. Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. SCIENTIFIC REPORTS, v. 6, . Web of Science Citations: 20. (11/50870-6)

THOMAS, ANDREW M.; JESUS, ELIANE C.; LOPES, ADEMAR; AGUIAR, JR., SAMUEL; BEGNAMI, MARIA D.; ROCHA, RAFAEL M.; CARPINETTI, PAOLA AVELAR; CAMARGO, ANAMARIA A.; HOFFMANN, CHRISTIAN; FREITAS, HELANO C.; et al. Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, v. 6, . Web of Science Citations: 17. (15/01507-7, 13/07914-8)

AMGARTEN, DEYVID; BRAGA, LUCAS P. P.; DA SILVA, ALINE M.; SETUBAL, JOAO C.. MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins. FRONTIERS IN GENETICS, v. 9, . Web of Science Citations: 6. (11/50870-6, 14/16450-8)

BRAGA, LUCAS P. P.; SOUCY, SHANNON M.; AMGARTEN, DEYVID E.; DA SILVA, ALINE M.; SETUBAL, JOAO C.. Bacterial Diversification in the Light of the Interactions with Phages: The Genetic Symbionts and Their Role in Ecological Speciation. FRONTIERS IN ECOLOGY AND EVOLUTION, v. 6, . Web of Science Citations: 2. (11/50870-6)

KINKER, GABRIELA SARTI; THOMAS, ANDREW MALTEZ; CARVALHO, VINICIUS JARDIM; LIMA, FELIPE PRATA; FUJITA, ANDRE. Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients. SCIENTIFIC REPORTS, v. 6, . Web of Science Citations: 3. (15/01507-7, 14/27287-0, 13/03447-6, 15/01587-0, 14/09576-5)

THOMAS, ANDREW MALTEZ; MANGHI, PAOLO; ASNICAR, FRANCESCO; PASOLLI, EDOARDO; ARMANINI, FEDERICA; ZOLFO, MORENO; BEGHINI, FRANCESCO; MANARA, SERENA; KARCHER, NICOLAI; POZZI, CHIARA; et al. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation. Nature Medicine, v. 25, n. 4, p. 667+, . Web of Science Citations: 1. (16/23527-2, 14/26897-0)

WIRBEL, JAKOB; PYL, PAUL THEODOR; KARTAL, ECE; ZYCH, KONRAD; KASHANI, ALIREZA; MILANESE, ALESSIO; FLECK, JONAS S.; VOIGT, ANITA Y.; PALLEJA, ALBERT; PONNUDURAI, RUBY; et al. Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer. Nature Medicine, v. 25, n. 4, p. 679+, . Web of Science Citations: 1. (16/23527-2)

FACHI, JOSE LUIS; FELIPE, JAQUELINE DE SOUZA; PRAL, LAIS PASSARIELLO; DA SILVA, BRUNA KARADI; CORREA, RENAN OLIVEIRA; PEREIRA DE ANDRADE, MIRELLA CRISTINY; DA FONSECA, DENISE MORAIS; BASSO, PAULO JOSE; SARAIVA CAMARA, NIELS OLSEN; DE SALES E SOUZA, ERICKA LORENNA; et al. Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism. CELL REPORTS, v. 27, n. 3, p. 750+, . Web of Science Citations: 0. (15/01507-7, 12/10653-9, 13/06810-4, 17/25679-7, 18/01753-6, 17/16280-3, 17/06577-9, 17/26366-2, 16/23142-3, 14/03002-7, 15/06134-4, 17/01451-7, 18/02208-1)

SILVA, NATALIA MARIA; SILVA ARAUJO DE OLIVEIRA, ALINE MARCIA; PEGORIN, STEFANIA; GIUSTI, CAMILA ESCANDURA; FERRARI, VITOR BATISTA; BARBOSA, DEIBS; MARTINS, LAYLA FARAGE; MORAIS, CARLOS; SETUBAL, JOAO CARLOS; VASCONCELLOS, SUZAN PANTAROTO; et al. Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting. PLoS One, v. 14, n. 4, . Web of Science Citations: 0. (11/50870-6, 16/23639-5)

WOOD‚ D.W.; SETUBAL‚ J.C.; KAUL‚ R.; MONKS‚ D.E.; KITAJIMA‚ J.P.; OKURA‚ V.K.; ZHOU‚ Y.; CHEN‚ L.; WOOD‚ G.E.; ALMEIDA JR‚ N.F.; et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science, v. 294, n. 5550, p. 2317-2323, .

PYLRO, VICTOR S.; MORAIS, DANIEL K.; DE OLIVEIRA, FRANCISLON S.; DOS SANTOS, FAUSTO G.; LEMOS, LEANDRO N.; OLIVEIRA, GUILHERME; ROESCH, LUIZ F. W.. BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies. MICROBIAL ECOLOGY, v. 72, n. 2, p. 443-447, . Web of Science Citations: 14. (13/05325-5)

LEMOS, LEANDRO N.; PEREIRA, ROBERTA V.; QUAGGIO, RONALDO B.; MARTINS, LAYLA F.; MOURA, LIVIA M. S.; DA SILVA, AMANDA R.; ANTUNES, LUCIANA P.; DA SILVA, ALINE M.; SETUBAL, JOAO C.. Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting. FRONTIERS IN MICROBIOLOGY, v. 8, . Web of Science Citations: 7. (13/05325-5)

AMGARTEN, DEYVID; MARTINS, LAYLA FARAGE; LOMBARDI, KAREN CRISTINA; ANTUNES, LUCIANA PRINCIPAL; SILVA DE SOUZA, ANA PAULA; NICASTRO, GIANLUCCA GONCALVES; KITAJIMA, ELLIOTT WATANABE; QUAGGIO, RONALDO BENTO; UPTON, CHRIS; SETUBAL, JOAO CARLOS; et al. Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages. BMC Genomics, v. 18, . Web of Science Citations: 5. (15/14334-3, 11/50870-6, 14/16450-8)

LIMA-JUNIOR, JAMES DALTRO; VIANA-NIERO, CRISTINA; CONDE OLIVEIRA, DANIEL V.; MACHADO, GABRIEL ESQUITINI; DA SILVA RABELLO, MICHELLE CRISTIANE; MARTINS-JUNIOR, JOAQUIM; MARTINS, LAYLA FARAGE; DIGIAMPIETRI, LUCIANO ANTONIO; DA SILVA, ALINE MARIA; SETUBAL, JOAO CARLOS; et al. Characterization of mycobacteria and mycobacteriophages isolated from compost at the Sao Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U. BMC Microbiology, v. 16, . Web of Science Citations: 2. (11/18326-4, 14/01825-6, 11/50870-6, 12/04911-5)

ERILL, IVAN; PUIGVERT, MARINA; LEGRAND, LUDOVIC; GUARISCHI-SOUSA, RODRIGO; VANDECASTEELE, CELINE; SETUBAL, JOAO C.; GENIN, STEPHANE; GUIDOT, ALICE; VALLS, MARC. Comparative Analysis of Ralstonia solanacearum Methylomes. FRONTIERS IN PLANT SCIENCE, v. 8, . Web of Science Citations: 1. (12/15197-1)

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