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BEYOND: establishing a fungal cell factory for recombinant protein production

Grant number: 22/05731-2
Support Opportunities:Research Projects - Thematic Grants
Start date: July 01, 2023
End date: June 30, 2028
Field of knowledge:Biological Sciences - Biochemistry - Biochemistry of Microorganisms
Principal Investigator:André Ricardo de Lima Damasio
Grantee:André Ricardo de Lima Damasio
Host Institution: Instituto de Biologia (IB). Universidade Estadual de Campinas (UNICAMP). Campinas , SP, Brazil
Pesquisadores principais:
Fábio Márcio Squina ; Rosana Goldbeck Coelho
Associated researchers:Lucas Miguel de Carvalho ; Marcelo Ventura Rubio ; Sarita Candida Rabelo ; Uffe Hasbro Mortensen
Associated research grant(s):25/04268-5 - Plastics Recycling and Upcycling /Gordon Research Conference, AR.EXT
24/01826-4 - Study of the influence of Aspergillus oryzae strain morphology on alternative protein production in bioreactor culture, AP.R
Associated scholarship(s):25/03783-3 - Prospection in public databases, cloning and production of recombinant PAZymes in A. oryzae, BP.TT
25/01711-5 - Construction of a Metabolic Model of Aspergillus oryzae: Guiding the production of recombinant proteins by Precision Fermentation, BP.DD
24/12776-8 - ALTERNATIVE CULTURE MEDIUM FOR CULTIVATED MEAT: APPLICATION OF PROTEIN HYDROLYSATES AND RECOMBINANT PROTEIN, BP.DR
+ associated scholarships 24/14844-0 - Biochemical and structural studies of recombinant basidiomycetes AA9 LPMOs, BP.DD
24/03892-4 - Biochemical studies of recombinant PAZymes produced by Aspergillus oryzae engineered strain, BP.DD
24/02154-0 - Expression of heterologous proteins for cultured meat and plant-based applications, BP.DD
24/02283-4 - Technical Support for the Development of Plastics Active Enzymes (PAZymes), BP.TT
23/12398-0 - PROSPECTION IN PUBLIC DATABASES, CLONING, AND PRODUCTION OF RECOMBINANT HYDROPHOBINS IN A. ORYZAE, BP.IC
23/08832-7 - Engineering and Characterization of an Aromatic Polyester Degrading Enzyme., BP.IC
23/12218-2 - Multiplex deletion of secreted proteins in Aspergillus oryzae: a minimum secretome, BP.PD
22/14112-4 - Development of a collection of extreme thermophilic enzymes active in the conversion of pet plastics, BP.DD
23/10777-4 - Technical Support for the Development of Plastics Active Enzymes (PAZymes), BP.TT
21/04254-3 - Development of Biorefinery concepts via coumaric acid conversion into high-value compounds, BP.PD - associated scholarships

Abstract

Filamentous fungi are capable of producing and secreting a variety of enzymes. Aspergillus sp. and Trichoderma sp. are the major fungal cell factories for industrial enzyme production. Aspergillus oryzae is recognized as GRAS (generally regarded as a safe organism) and has the ability to secrete a high titer of proteins. Therefore, A. oryzae has been used as a low-cost microbial cell factory for the production of recombinant proteins and has the potential to be engineered to boost the secretory pathway. The overall goal is to establish the filamentous fungus A. oryzae as a robust and economically viable microbial cell factory for the production of recombinant proteins for different applications. To do that, we want to harness the synthetic biology concept (learn, design, build and test) combining systems biology, fungal genetic engineering, selection of recombinant proteins with biotechnological applications, bioprocess design, and techno-economical analysis. To achieve that, this project is divided into five aims: (Aim 1) Induction of A. oryzae secretory pathway using Brazilian agro-industrial residues; (Aim 2) Removal of host secreted proteins by multiplex gene deletion; (Aim 3) Production of recombinant proteins with biotechnological applications; (Aim 4) Evaluation of recombinant proteins productivity and function; and (Aim 5) Fungal strains fermentation and techno-economic analysis. We propose to work with three groups of proteins: (1) lytic polysaccharide monooxygenases (LPMOs); (2) Plastic-Active enZymes (PAZymes); and (3) alternative proteins applied to the production of plant-based and cultivated meat. Assuming our team integrated work will result in a robust A. oryzae engineered strain producing high titers of different recombinant proteins using an agro-industrial residue as inducer, multiomics experiments (transcriptome, proteome and metabolome) will be carried out to understand how the recombinant strains adapt to high demand for the secretory pathway. These data will be used to build a genome-scale metabolic model (GEM) for A. oryzae, which will allow the planning of new mutations for genetic improvement of the strain. (AU)

Articles published in Agência FAPESP Newsletter about the research grant:
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Scientific publications (8)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
WASSANO, NATALIA S.; DA SILVA, GABRIELA B.; REIS, ARTUR H.; GERHARDT, JAQUELINE A.; ANTONIEL, EVERTON P.; AKIYAMA, DANIEL; REZENDE, CAROLINE P.; NEVES, LEANDRO X.; VASCONCELOS, ELTON J. R.; DE FIGUEIREDO, FERNANDA L.; et al. Sirtuin E deacetylase is required for full virulence of Aspergillus fumigatus. COMMUNICATIONS BIOLOGY, v. 7, n. 1, p. 17-pg., . (18/09948-0, 20/06151-4, 22/03075-0, 21/04977-5, 22/02992-0, 22/05731-2)
VILELA, NATHALIA; GORKOVSKIY, ANTON; HERRERA-MALAVER, BEATRIZ; TRAMONTINA, ROBSON; CAIRO, JOAO PAULO L. FRANCO; MANDELLI, FERNANDA; GONCALVES, THIAGO; SODRE, VICTORIA; STEENSELS, JAN; DAMASIO, ANDRE; et al. From residues to clove: Harnessing novel phenolic acid decarboxylase for 4-Vinyl guaiacol production in industrial Yeast. FOOD AND BIOPRODUCTS PROCESSING, v. 151, p. 8-pg., . (20/05784-3, 22/05731-2, 22/08958-8, 15/50590-4, 20/10593-2, 17/08166-6, 21/04254-3)
DE ASSIS, MICHELLE A.; DA SILVA, JOVANDERSON J. B.; DE CARVALHO, LUCAS M.; PARREIRAS, LUCAS S.; CAIRO, JOAO PAULO L. F.; MARONE, MARINA P.; GONCALVES, THIAGO A.; SILVA, DESIREE S.; DANTZGER, MIRIAM; DE FIGUEIREDO, FERNANDA L.; et al. A Multiomics Perspective on Plant Cell Wall-Degrading Enzyme Production: Insights from the Unexploited Fungus Trichoderma erinaceum. JOURNAL OF FUNGI, v. 10, n. 6, p. 25-pg., . (19/12914-3, 15/50612-8, 22/05731-2, 16/02792-0, 16/09950-0, 21/02493-0)
DE FIGUEIREDO, FERNANDA LOPES; CONTESINI, FABIANO JARES; TERRASAN, CESAR RAFAEL FANCHINI; GERHARDT, JAQUELINE ALINE; CORREA, ANA BEATRIZ; ANTONIEL, EVERTON PASCHOAL; WASSANO, NATALIA SAYURI; LEVASSOR, LUCAS; RABELO, SARITA CANDIDA; FRANCO, TELMA TEIXEIRA; et al. Engineering the secretome of Aspergillus niger for cellooligosaccharides production from plant biomass. Microbial Cell Factories, v. 23, n. 1, p. 13-pg., . (17/26370-0, 15/50612-8, 22/05731-2, 19/21609-0, 17/10083-1)
ROMAN, ELLEN KAREN BARRETO; RAMOS, MURILO ANTONIO; TOMAZETTO, GEIZECLER; FOLTRAN, BRUNO BOTEGA; GALVAO, MATHEUS HENRIQUE; CIANCAGLINI, IARA; TRAMONTINA, ROBSON; RODRIGUES, FELIPE DE ALMEIDA; DA SILVA, LARISSA SOARES; SANDANO, ANA LUIZA HERNANDES; et al. Plastic-degrading microbial communities reveal novel microorganisms, pathways, and biocatalysts for polymer degradation and bioplastic production. Science of The Total Environment, v. 949, p. 14-pg., . (19/19360-3, 23/04941-6, 20/05784-3, 23/04828-5, 15/23279-6, 23/08832-7, 20/11019-8, 23/04782-5, 21/04254-3, 22/08958-8, 23/12398-0, 22/05731-2, 22/14112-4)
PROCOPIO, DIELLE PIEROTTI; LEE, JAE WON; SHIN, JONGHYEOK; TRAMONTINA, ROBSON; AVILA, PATRICIA FELIX; BRENELLI, LIVIA BEATRIZ; SQUINA, FABIO MARCIO; DAMASIO, ANDRE; RABELO, SARITA CANDIDA; GOLDBECK, ROSANA; et al. Metabolic engineering of Saccharomyces cerevisiae for second-generation ethanol production from xylo-oligosaccharides and acetate. SCIENTIFIC REPORTS, v. 13, n. 1, p. 14-pg., . (17/15477-8, 20/05784-3, 15/50612-8, 18/17172-2, 18/01759-4, 22/08958-8, 21/04254-3, 15/50590-4, 22/05731-2, 19/18075-3)
CAIRO, JOA O PAULO L. FRANCO; ALMEIDA, DNANE V.; ANDRADE, VIVIANE B.; TELFER, ABBEY; GONCALVES, THIAGO A.; DIAZ, DANIEL E.; FIGUEIREDO, FERNANDA L.; BRENELLI, LIVIA B.; WALTON, PAUL H.; GARCIA, WANIUS; et al. Biochemical and structural insights of a recombinant AA16 LPMO from the marine and sponge-symbiont Peniophora sp. International Journal of Biological Macromolecules, v. 280, p. 11-pg., . (20/05784-3, 22/08958-8, 18/13500-5, 15/50590-4, 22/05731-2, 17/17275-3)
TRAMONTINA, ROBSON; SCOPEL, EUPIDIO; CARDOSO, VICTOR GUSTAVO KELIS; MARTINS, MANOELA; DA SILVA, MARCOS FELLIPE; FLAIBAM, BARBARA; SALVADOR, MARCOS J.; GOLDBECK, ROSANA; DAMASIO, ANDRE; SQUINA, FABIO MARCIO. Hydroxycinnamic Acid Extraction from Multiple Lignocellulosic Sources: Correlations with Substrate Composition and Taxonomy for Flavoring and Antioxidant Applications. Journal of Agricultural and Food Chemistry, v. 72, n. 50, p. 12-pg., . (20/02871-2, 22/08958-8, 19/19360-3, 21/04254-3, 22/05731-2, 21/09693-5, 15/50590-4)