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Combining new technologies to monitor phenology from leaves to ecosystems

Abstract

The e-phenology is a multidisciplinary project that explores innovative solutions for plant monitoring in the tropics, combining research in Computer Science, Phenology, and Ecology. On-the-ground phenological observations preclude large areas of study and are laborious and time consuming. Near-surface remote phenology with digital cameras is still area-limited but reduces considerably manpower. Furthermore, it has proven to be an important tool for monitoring several species and accurately accessing leaf changes. In this project, we aim to apply new technologies to enhance the capabilities of near-surface remote phenological observation to detect changes on various scales, from leaves to ecosystems. Our goal is to address theoretical and practical problems involving the combination of two remote phenology monitoring systems: digital and hyperspectral cameras at three scales: on-the-ground, phenology tower, and near-space using Unmanned Aerial Vehicle (UAV). It is geared towards four innovative objectives: (a) to develop a protocol for extracting spectral data from the RGB color channels, improving the information that can be derived from low-cost digital monitoring systems; (b) to apply those technologies to extract plant ecophysiological data advancing our knowledge of plant seasonal responses to environmental drivers in the tropics to climate change; (c) to develop near-surface monitoring system for reproductive phenophases i.e., flowering and fruiting, based on digital and hyperspectral images truth-grounded by species-specific spectral data; and (d) to advance and to apply novel database, image processing, machine learning, and visualization models, methods, and algorithms to support acquisition, management, integration, and analysis of phenology data systems from various scales. The research team is composed of Computer Scientists and researchers in Plant Ecology and Phenology. (AU)

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VEICULO: TITULO (DATA)
VEICULO: TITULO (DATA)

Scientific publications (113)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
CALUMBY, RODRIGO TRIPODI; GONCALVES, MARCOS ANDRE; TORRES, RICARDO DA SILVA. Diversity-based interactive learning meets multimodality. Neurocomputing, v. 259, n. SI, p. 159-175, . (13/50155-0, 13/50169-1)
DOS SANTOS, JEFERSSON A.; PENATTI, OTAVIO A. B.; GOSSELIN, PHILIPPE-HENRI; FALCAO, ALEXANDRE X.; PHILIPP-FOLIGUET, SYLVIE; TORRES, RICARDO DA S.. Efficient and Effective Hierarchical Feature Propagation. IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE SENSING, v. 7, n. 12, SI, p. 4632-4643, . (13/50155-0, 12/18768-0, 09/10554-8, 13/50169-1)
FARIA, FABIO A.; ALMEIDA, JURANDY; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA C.; ROCHA, ANDERSON; TORRES, RICARDO DA S.. Time series-based classifier fusion for fine-grained plant species recognition. PATTERN RECOGNITION LETTERS, v. 81, n. SI, p. 101-109, . (10/51307-0, 14/00215-0, 10/14910-0, 10/52113-5, 13/50155-0, 10/05647-4, 07/52015-0, 09/18438-7)
WERNECK, RAFAEL DE OLIVEIRA; DE ALMEIDA, WALDIR RODRIGUES; STEIN, BERNARDO VECCHIA; PAZINATO, DANIEL VATANABE; MENDES JUNIOR, PEDRO RIBEIRO; BIZETTO PENATTI, OTAVIO AUGUSTO; ROCHA, ANDERSON; TORRES, RICARDO DA SILVA. Kuaa: A unified framework for design, deployment, execution, and recommendation of machine learning experiments. FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, v. 78, n. 1, p. 59-76, . (16/18429-1, 15/19222-9, 13/50155-0, 14/12236-1, 13/50169-1)
OLLERTON, JEFF; LIEDE-SCHUMANN, SIGRID; ENDRESS, MARY E.; MEVE, ULRICH; RECH, ANDRE RODRIGO; SHUTTLEWORTH, ADAM; KELLER, HECTOR A.; FISHBEIN, MARK; ALVARADO-CARDENAS, LEONARDO O.; AMORIM, FELIPE W.; et al. The diversity and evolution of pollination systems in large plant clades: Apocynaceae as a case study. ANNALS OF BOTANY, v. 123, n. 2, SI, p. 311-325, . (10/51307-0, 13/50155-0)
PEREIRA, LUIS A. M.; TORRES, RICARDO DA SILVA. Semi-supervised transfer subspace for domain adaptation. PATTERN RECOGNITION, v. 75, n. SI, p. 235-249, . (13/50155-0, 15/09169-3, 13/50169-1)
WERNECK, RAFAEL DE O.; RAVEAUX, ROMAIN; TABBONE, SALVATORE; TORRES, RICARDO DA S.; BAI, X; HANCOCK, ER; HO, TK; WILSON, RC; BIGGIO, B; ROBLESKELLY, A. Learning Cost Functions for Graph Matching. STRUCTURAL, SYNTACTIC, AND STATISTICAL PATTERN RECOGNITION, S+SSPR 2018, v. 11004, p. 10-pg., . (14/50715-9, 17/20945-0, 14/12236-1, 16/18429-1, 16/50250-1, 13/50169-1, 13/50155-0, 15/24494-8)
WANG, JING; SONG, GUANGQIN; LIDDELL, MICHAEL; MORELLATO, PATRICIA; LEE, CALVIN K. F.; YANG, DEDI; ALBERTON, BRUNA; DETTO, MATTEO; MA, XUANLONG; ZHAO, YINGYI; et al. An ecologically-constrained deep learning model for tropical leaf phenology monitoring using PlanetScope satellites. REMOTE SENSING OF ENVIRONMENT, v. 286, p. 16-pg., . (14/00215-0, 13/50155-0, 19/16191-6, 16/01413-5, 19/11835-2)
PEREIRA, ERICO M.; TORRES, RICARDO DA S.; DOS SANTOS, JEFERSSON A.. A genetic algorithm approach for image representation learning through color quantization. MULTIMEDIA TOOLS AND APPLICATIONS, v. 80, n. 10, p. 15315-15350, . (13/50169-1, 16/50250-1, 15/24494-8, 17/20945-0, 13/50155-0, 14/50715-9, 14/12236-1)
ALVARADO, SWANNI T.; FREIRE SILVA, THIAGO SANNA; ARCHIBALD, SALLY. Management impacts on fire occurrence: A comparison of fire regimes of African and South American tropical savannas in different protected areas. Journal of Environmental Management, v. 218, p. 79-87, . (14/12728-1, 16/00879-0, 13/50155-0)
ABERNETHY, KATHARINE; BUSH, EMMA R.; FORGET, PIERRE-MICHEL; MENDOZA, IRENE; MORELLATO, LEONOR PATRICIA C.. Current issues in tropical phenology: a synthesis. Biotropica, v. 50, n. 3, p. 477-482, . (12/21601-0, 13/50155-0)
MENINI, NATHALIA; ALMEIDA, ALEXANDRE E.; LAMPARELLI, RUBENS; LE MAIRE, GUERRIC; DOS SANTOS, JEFERSSON A.; PEDRINI, HELIO; HIROTA, MARINA; TORRES, RICARDO DA S.. A Soft Computing Framework for Image Classification Based on Recurrence Plots. IEEE Geoscience and Remote Sensing Letters, v. 16, n. 2, p. 320-324, . (14/50715-9, 16/26170-8, 18/06918-3, 13/50155-0, 14/12236-1, 15/02105-0, 17/12646-3, 13/50169-1)
WERNECK, RAFAEL DE O.; DOURADO, ICARO C.; FADEL, SAMUEL G.; TABBONE, SALVATORE; TORRES, RICARDO DA S.; IEEE. GRAPH-BASED EARLY-FUSION FOR FLOOD DETECTION. 2018 25TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP), v. N/A, p. 5-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 16/18429-1, 14/50715-9, 17/16453-5, 17/24005-2)
LEITE, ROGER A.; SCHNORR, LUCAS MELLO; ALMEIDA, JURANDY; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA C.; TORRES, RICARDO DA S.; COMBA, JOAO L. D.. PhenoVis - A tool for visual phenological analysis of digital camera images using chronological percentage maps. INFORMATION SCIENCES, v. 372, p. 181-195, . (10/51307-0, 14/00215-0, 10/52113-5, 13/50155-0, 09/54208-6, 07/52015-0, 09/18438-7, 13/50169-1)
ALMEIDA, ALEXANDRE E.; TORRES, RICARDO DA S.. Remote Sensing Image Classification Using Genetic-Programming-Based Time Series Similarity Functions. IEEE Geoscience and Remote Sensing Letters, v. 14, n. 9, p. 1499-1503, . (14/50715-9, 13/50155-0, 14/12236-1, 15/02105-0, 13/50169-1)
ALBERTON, BRUNA; TORRES, RICARDO DA S.; CANCIAN, LEONARDO F.; BORGES, BRUNO D.; ALMEIDA, JURANDY; MARIANO, GREICE C.; DOS SANTOS, JEFERSSON; CERDEIRA MORELLATOA, LEONOR PATRICIA. Introducing digital cameras to monitor plant phenology in the tropics: applications for conservation. PERSPECTIVES IN ECOLOGY AND CONSERVATION, v. 15, n. 2, p. 82-90, . (14/13354-8, 16/01413-5, 10/51307-0, 14/00215-0, 10/52113-5, 13/50155-0, 07/52015-0, 16/06441-7, 09/18438-7)
MARUYAMA, PIETRO K.; NUNES, CARLOS E. P.; VIZENTIN-BUGONI, JEFERSON; GUSTAFSSON, SIMONE; CERDEIRA MORELLATO, LEONOR PATRICIA. Are native bees and Apis mellifera equally efficient pollinators of the rupestrian grassland daisy Aspilia jolyana (Asteraceae)?. Acta Botanica Brasilica, v. 32, n. 3, p. 6-pg., . (15/21457-4, 13/50155-0)
SANTANA, TIAGO M. H. C.; TORRES, RICARDO DA S.; DOS SANTOS, JEFERSSON A.; IEEE. SUPERPIXEL CONTEXT DESCRIPTION BASED ON VISUAL WORDS CO-OCCURRENCE MATRIX. IGARSS 2018 - 2018 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM, v. N/A, p. 4-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 16/50250-1, 15/24494-8, 14/50715-9, 17/20945-0)
ALMEIDA, ALEXANDRE E.; MENINI, NATHALIA; VERBESSELT, JAN; TORRES, RICARDO DA S.; IEEE. BFAST EXPLORER: AN EFFECTIVE TOOL FOR TIME SERIES ANALYSIS. IGARSS 2018 - 2018 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM, v. N/A, p. 4-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 15/02105-0, 15/24494-8, 14/50715-9, 16/26170-8, 16/08085-3)
ALMEIDA, JURANDY; PEDRONETTE, DANIEL C. G.; ALBERTON, BRUNA C.; MORELLATO, LEONOR PATRICIA C.; TORRES, RICARDO DA S.. Unsupervised Distance Learning for Plant Species Identification. IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE SENSING, v. 9, n. 12, p. 14-pg., . (13/50169-1, 13/50155-0, 10/52113-5, 14/00215-0, 16/06441-7, 10/51307-0, 13/08645-0, 09/18438-7)
DOS SANTOS, JOYCE MIRANDA; DE MOURA, EDLENO SILVA; DA SILVA, ALTIGRAN SOARES; TORRES, RICARDO DA SILVA. Color and texture applied to a signature-based bag of visual words method for image retrieval. MULTIMEDIA TOOLS AND APPLICATIONS, v. 76, n. 15, p. 16855-16872, . (10/52113-5, 13/50155-0, 13/50169-1)
ALMEIDA, JURANDY; DOS SANTOS, JEFERSSON A.; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA C.; TORRES, RICARDO DA S.. Phenological visual rhythms: Compact representations for fine-grained plant species identification. PATTERN RECOGNITION LETTERS, v. 81, p. 11-pg., . (14/00215-0, 09/18438-7, 10/51307-0, 07/52015-0, 13/50155-0, 13/50169-1, 10/52113-5)
PEREIRA, LUIS A. M.; TORRES, RICARDO DA SILVA. Semi-supervised transfer subspace for domain adaptation. PATTERN RECOGNITION, v. 75, p. 15-pg., . (13/50169-1, 15/09169-3, 13/50155-0)
CIRNE, MARCOS; ANDALO, FERNANDA; DIAS, RAFAEL; RESEK, THIAGO; BERTOCCO, GABRIEL; TORRES, RICARDO DA S.; ROCHA, ANDERSON; IEEE. DEEP FACE VERIFICATION FOR SPHERICAL IMAGES. 2019 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP), v. N/A, p. 5-pg., . (13/50155-0, 14/12236-1, 17/12646-3, 16/50250-1, 15/24494-8, 14/50715-9, 17/20945-0)
DIAS, DANIELLE; DIAS, ULISSES; MENINI, NATHALIA; LAMPARELLI, RUBENS; LE MAIRE, GUERRIC; TORRES, RICARDO; IEEE. PIXELWISE REMOTE SENSING IMAGE CLASSIFICATION BASED ON RECURRENCE PLOT DEEP FEATURES. 2019 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2019), v. N/A, p. 4-pg., . (13/50155-0, 14/12236-1, 16/50250-1, 15/24494-8, 14/50715-9, 17/20945-0)
SANTOS, ELISANGELA SILVA; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA; TORRES, RICARDO DA SILVA; IEEE. PIXELWISE TIME SERIES RETRIEVAL IN PHENOLOGICAL STUDIES. 2019 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2019), v. N/A, p. 4-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 16/50250-1, 15/24494-8, 14/50715-9, 17/20945-0)
NOGUEIRA, KEILLER; DOS SANTOS, JEFERSSON A.; FORNAZARI, TAMIRES; FREIRE SILVA, THIAGO SANNA; MORELLATO, LEONOR PATRICIA; TORRES, RICARDO DA S.; IEEE. Towards vegetation species discrimination by using data-driven descriptors. 2016 9TH IAPR WORKSHOP ON PATTERN RECOGNITION IN REMOTE SENSING (PRRS), v. N/A, p. 6-pg., . (13/50169-1, 13/50155-0)
FARIA, FABIO A.; ALMEIDA, JURANDY; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA C.; ROCHA, ANDERSON; TORRES, RICARDO DA S.. Time series-based classifier fusion for fine-grained plant species recognition. PATTERN RECOGNITION LETTERS, v. 81, p. 9-pg., . (10/05647-4, 10/14910-0, 14/00215-0, 10/51307-0, 07/52015-0, 10/52113-5, 13/50155-0, 09/18438-7)
FARIA, FABIO A.; ALMEIDA, JURANDY; ALBERTON, BRUNA; MORELLATO, LEONOR PATRICIA C.; TORRES, RICARDO DA S.. Fusion of time series representations for plant recognition in phenology studies. PATTERN RECOGNITION LETTERS, v. 83, p. 10-pg., . (14/00215-0, 10/51307-0, 13/50169-1, 10/52113-5, 13/50155-0, 09/18438-7)
CALUMBY, RODRIGO TRIPODI; GONCALVES, MARCOS ANDRE; TORRES, RICARDO DA SILVA. Diversity-based interactive learning meets multimodality. Neurocomputing, v. 259, p. 17-pg., . (13/50169-1, 13/50155-0)
GUTIERREZ-CASTILLA, NICOLAS; TORRES, RICARDO DA S.; FALCAO, ALEXANDRE X.; KOZERKE, SEBASTIAN; SCHWITTER, JURG; MASCI, PIER-GIORGIO; MONTOYA-ZEGARRA, JAVIER A.; IEEE. Long-Range Decoder Skip Connections: Exploiting Multi-Context Information for Cardiac Image Segmentation. 2019 32ND SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (14/12236-1, 16/50250-1, 17/20945-0, 15/24494-8, 13/50155-0)
FERNANDES, G. WILSON; BARBOSA, N. P. U.; ALBERTON, B.; BARBIERI, A.; DIRZO, R.; GOULART, F.; GUERRA, T. J.; MORELLATO, L. P. C.; SOLAR, R. R. C.. The deadly route to collapse and the uncertain fate of Brazilian rupestrian grasslands. BIODIVERSITY AND CONSERVATION, v. 27, n. 10, p. 2587-2603, . (13/50155-0)
SILVEIRA, FERNANDO A. O.; BARBOSA, MILTON; BEIROZ, WALLACE; CALLISTO, MARCOS; MACEDO, DIEGO R.; CERDEIRA MORELLATO, LEONOR PATRICIA; NEVES, FREDERICO S.; NUNES, YULE R. F.; SOLAR, RICARDO R.; WILSON FERNANDES, G.. Tropical mountains as natural laboratories to study global changes: A long-term ecological research project in a megadiverse biodiversity hotspot. PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS, v. 38, p. 64-73, . (09/54208-6, 13/50155-0, 10/51307-0, 10/52113-5)
MENINI, NATHALIA; ALMEIDA, ALEXANDRE E.; LAMPARELLI, RUBENS; LE MAIRE, GUERRIC; OLIVEIRA, RAFAEL S.; VERBESSELT, JAN; HIROTA, MARINA; TORRES, RICARDO DA S.. Tucuma A toolbox for spatiotemporal remote sensing image analysis. IEEE GEOSCIENCE AND REMOTE SENSING MAGAZINE, v. 7, n. 3, p. 13-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 15/02105-0, 17/12646-3, 18/06918-3, 14/50715-9, 16/26170-8, 16/08085-3)
VARGAS MUNOZ, JAVIER A.; DIAS, ZANONI; TORRES, RICARDO S.; ASSOC COMP MACHINERY. A Genetic Programming Approach for Searching on Nearest Neighbors Graphs. ICMR'19: PROCEEDINGS OF THE 2019 ACM INTERNATIONAL CONFERENCE ON MULTIMEDIA RETRIEVAL, v. N/A, p. 5-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 16/50250-1, 15/24494-8, 14/50715-9, 17/20945-0)
WERNECK, RAFAEL DE OLIVEIRA; DE ALMEIDA, WALDIR RODRIGUES; STEIN, BERNARDO VECCHIA; PAZINATO, DANIEL VATANABE; MENDES JUNIOR, PEDRO RIBEIRO; BIZETTO PENATTI, OTAVIO AUGUSTO; ROCHA, ANDERSON; TORRES, RICARDO DA SILVA. Kuaa: A unified framework for design, deployment, execution, and recommendation of machine learning experiments. FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, v. 78, p. 18-pg., . (13/50169-1, 13/50155-0, 14/12236-1, 16/18429-1, 15/19222-9)
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SILVA, FERNANDA B.; WERNECK, RAFAEL DE O.; GOLDENSTEIN, SIOME; TABBONE, SALVATORE; TORRES, RICARDO DA S.. Graph-based bag-of-words for classification. PATTERN RECOGNITION, v. 74, p. 266-285, . (16/18429-1, 12/50468-6, 13/11378-4, 13/50155-0, 14/12236-1, 12/16172-2, 13/50169-1)
ESCOBAR, DIEGO F. E.; SILVEIRA, FERNANDO A. O.; MORELLATO, LEONOR PATRICIA C.. Timing of seed dispersal and seed dormancy in Brazilian savanna: two solutions to face seasonality. ANNALS OF BOTANY, v. 121, n. 6, p. 1197-1209, . (14/21430-6, 10/51307-0, 13/50155-0, 09/54208-6)
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BRITO, V. L. G.; MAIA, F. R.; SILVEIRA, F. A. O.; FRACASSO, C. M.; LEMOS-FILHO, J. P.; FERNANDES, G. W.; GOLDENBERG, R.; MORELLATO, L. P. C.; SAZIMA, M.; STAGGEMEIER, V. G.. Reproductive phenology of Melastomataceae species with contrasting reproductive systems: contemporary and historical drivers. Plant Biology, v. 19, n. 5, p. 806-817, . (14/13899-4, 10/51307-0, 13/50155-0)
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STAGGEMEIER, VANESSA GRAZIELE; GUTIERREZ CAMARGO, MARIA GABRIELA; FELIZOLA DINIZ-FILHO, JOSE ALEXANDRE; FRECKLETON, ROBERT; JARDIM, LUCAS; CERDEIRA MORELLATO, LEONOR PATRICIA. The circular nature of recurrent life cycle events: a test comparing tropical and temperate phenology. JOURNAL OF ECOLOGY, v. 108, n. 2, p. 393-404, . (16/02312-8, 14/13899-4, 15/10754-8, 18/14118-7, 13/50155-0)
ESCOBAR, DIEGO F. E.; SILVEIRA, FERNANDO A. O.; MORELLATO, LEONOR PATRICIA C.. Do regeneration traits vary according to vegetation structure? A case study for savannas. JOURNAL OF VEGETATION SCIENCE, v. 32, n. 1, . (14/21430-6, 13/50155-0, 10/51307-0, 17/27100-6)
OLIVEIRA, ALBERTO; OAKLEY, ERIC; TORRES, RICARDO DA SILVA; ROCHA, ANDERSON. Relevance prediction in similarity-search systems using extreme value theory. JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION, v. 60, p. 236-249, . (14/50715-9, 16/50250-1, 17/20945-0, 14/12236-1, 17/12646-3, 13/50155-0, 15/24494-8)
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DIAS, DANIELLE; PINTO, ALLAN; DIAS, ULISSES; LAMPARELLI, RUBENS; LE MAIRE, GUERRIC; TORRES, RICARDO DA S.. A Multirepresentational Fusion of Time Series for Pixelwise Classification. IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE SENSING, v. 13, p. 4399-4409, . (19/16253-1, 14/50715-9, 17/20945-0, 14/12236-1, 13/50155-0, 15/24494-8)
ESCOBAR ESCOBAR, DIEGO FERNANDO; DE CASAS, RAFAEL RUBIO; CERDEIRA MORELLATO, LEONOR PATRICIA. Many roads to success: different combinations of life-history traits provide accurate germination timing in seasonally dry environments. OIKOS, v. 130, n. 11, . (14/21430-6, 17/27100-6, 10/51307-0, 13/50155-0)
UCHOA MAIA RODRIGUES, DANIELE C.; MOURA, FELIPE A.; CUNHA, SERGIO AUGUSTO; TORRES, RICARDO DA S.; LINSEN, L; TELEA, A; BRAZ, J. Visualizing Temporal Graphs using Visual Rhythms A Case Study in Soccer Match Analysis. PROCEEDINGS OF THE 12TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS (VISIGRAPP 2017), VOL 3, v. N/A, p. 12-pg., . (13/50169-1, 13/50155-0)

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