Search for genetic variants with pathogenic potential in patients with a characteristic phenotype of coesinopathies focusing on the Cornelia de Lange Syndrome

• Grant number: 22/03428-0
• Support Opportunities: Scholarships in Brazil - Doctorate (Direct)
• Start date: May 01, 2022
• End date: October 31, 2027
• Field of knowledge: Health Sciences - Medicine - Medical Clinics
• Principal Investigator: Maria Isabel de Souza Aranha Melaragno
• Grantee: Beatriz de Carvalho Nunes
• Host Institution: Escola Paulista de Medicina (EPM). Universidade Federal de São Paulo (UNIFESP). Campus São Paulo. São Paulo , SP, Brazil
• Associated research grant: 19/21644-0 - Impact of genetic variants on genomic stability and their effects on the phenotype, AP.TEM
• Associated scholarship(s): 23/12833-9 - Applying next-generation phenotyping to prioritize Cornelia de Lange Syndrome patients for additional exams and improve variant classification, BE.EP.DD

Abstract

Coesinopathies is the name given to diseases caused by mutations in genes that are part of the protein complex called cohesin or its regulators. This complex has several functions in cellular activity and maintenance of genomic architecture. Because they are syndromes caused by mutations that affect the same structure, the phenotypes of coesinopathies often overlap, making clinical diagnosis difficult without molecular investigation. Other factors such as mosaic variants in the NIPBL gene, which are not identified in DNA obtained from peripheral blood, and variants in non-coding regions of the genome also contribute to the difficulty of clinical and molecular diagnosis of coesinopathies. Therefore, this work aims to search for new variants related to coesinopathies, especially Cornelia de Lange Syndrome, through exome sequencing using oral mucosa samples, as well as Copy Number Variations (CNVs), from SNP- array, and variants at non-coding locations in the genome, by genome sequencing. The results obtained may suggest new regions and variants of interest for the study and diagnosis of cohesinopathies, especially Cornelia de Lange Syndrome, thus increasing the knowledge of genetic factors related to the pathogenesis of cohesinopathies. (AU)

Scientific publications

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

NUNES, BEATRIZ CARVALHO; VILELLA, THAINA; PINHEIRO, ISABEL; AOI, HIROMI; SEYAMA, RIE; MATSUMOTO, NAOMICHI; BELLUCCO, FERNANDA TEIXEIRA; KIM, CHONG; MELARAGNO, MARIA ISABEL; KRAWITZ, PETER; et al. Next-generation phenotyping improves the diagnostic yield in a Cornelia de Lange Syndrome Brazilian cohort. European Journal of Human Genetics, v. 32, p. 2-pg., 2024-12-01. (23/12833-9, 19/21644-0, 22/03428-0)

NUNES, BEATRIZ CARVALHO; FAVILLA, BIANCA PEREIRA; VILELLA, THAINA; PINHEIRO, ISABEL; AOI, HAROMI; SEYAMA, RIE; MATSUMOTO, NAOMICHI; BELLUCCO, FERNANDA TEIXEIRA; KIM, CHONG; MELARAGNO, MARIA ISABEL. Buccal cell whole exome sequencing improves the diagnostic yield in a Cornelia de Lange Syndrome Brazilian cohort. European Journal of Human Genetics, v. 32, p. 2-pg., 2024-01-01. (19/21644-0, 22/03428-0)