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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

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Wang, Mingxun ; Carver, Jeremy J. ; Phelan, Vanessa V. ; Sanchez, Laura M. ; Garg, Neha ; Peng, Yao ; Nguyen, Don Duy ; Watrous, Jeramie ; Kapono, Clifford A. ; Luzzatto-Knaan, Tal ; Porto, Carla ; Bouslimani, Amina ; Melnik, Alexey V. ; Meehan, Michael J. ; Liu, Wei -Ting ; Criisemann, Max ; Boudreau, Paul D. ; Esquenazi, Eduardo ; Sandoval-Calderon, Mario ; Kersten, Roland D. ; Pace, Laura A. ; Quinn, Robert A. ; Duncan, Katherine R. ; Hsu, Cheng-Chih ; Floros, Dimitrios J. ; Gavilan, Ronnie G. ; Kleigrewe, Karin ; Northen, Trent ; Dutton, Rachel J. ; Parrot, Delphine ; Carlson, Erin E. ; Aigle, Bertrand ; Michelsen, Charlotte F. ; Jelsbak, Lars ; Sohlenkamp, Christian ; Pevzner, Pavel ; Edlund, Anna ; McLean, Jeffrey ; Piel, Jorn ; Murphy, Brian T. ; Gerwick, Lena ; Liaw, Chih-Chuang ; Yang, Yu-Liang ; Humpf, Hans-Ulrich ; Maansson, Maria ; Keyzers, Robert A. ; Sims, Amy C. ; Johnson, Andrew R. ; Sidebottom, Ashley M. ; Sedio, Brian E. ; Klitgaard, Andreas ; Larson, Charles B. ; Boya P, Cristopher A. ; Torres-Mendoza, Daniel ; Gonzalez, David J. ; Silva, Denise B. ; Marques, Lucas M. ; Demarque, Daniel P. ; Pociute, Egle ; O'Neill, Ellis C. ; Briand, Enora ; Helfrich, Eric J. N. ; Granatosky, Eve A. ; Glukhov, Evgenia ; Ryffel, Florian ; Houson, Hailey ; Mohimani, Hosein ; Kharbush, Jenan J. ; Zeng, Yi ; Vorholt, Julia A. ; Kurita, Kenji L. ; Charusanti, Pep ; McPhail, Kerry L. ; Nielsen, Kristian Fog ; Vuong, Lisa ; Elfeki, Maryam ; Traxler, Matthew F. ; Engene, Niclas ; Koyama, Nobuhiro ; Vining, Oliver B. ; Baric, Ralph ; Silva, Ricardo R. ; Mascuch, Samantha J. ; Tomasi, Sophie ; Jenkins, Stefan ; Macherla, Venkat ; Hoffman, Thomas ; Agarwal, Vinayak ; Williams, Philip G. ; Dai, Jingqui ; Neupane, Ram ; Gurr, Joshua ; Rodriguez, Andres M. C. ; Lamsa, Anne ; Zhang, Chen ; Dorrestein, Kathleen ; Duggan, Brendan M. ; Almaliti, Jehad ; Allard, Pierre-Marie ; Phapale, Prasad ; Nothias, Louis-Felix ; Alexandrovr, Theodore ; Litaudon, Marc ; Wolfender, Jean-Luc ; Kyle, Jennifer E. ; Metz, Thomas O. ; Peryea, Tyler ; Nguyen, Dac-Trung ; VanLeer, Danielle ; Shinn, Paul ; Jadhav, Ajit ; Muller, Rolf ; Waters, Katrina M. ; Shi, Wenyuan ; Liu, Xueting ; Zhang, Lixin ; Knight, Rob ; Jensen, Paul R. ; Palsson, Bernhard O. ; Pogliano, Kit ; Linington, Roger G. ; Gutierrez, Marcelino ; Lopes, Norberto P. ; Gerwick, William H. ; Moore, Bradley S. ; Dorrestein, Pieter C. ; Bandeira, Nuno
Total Authors: 127
Document type: Journal article
Source: NATURE BIOTECHNOLOGY; v. 34, n. 8, p. 828-837, AUG 2016.
Web of Science Citations: 409
Abstract

The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not searchable with raw data and the NP community has no way to share data other than in published papers. Although mass spectrometry (MS) techniques are well-suited to high-throughput characterization of NP, there is a pressing need for an infrastructure to enable sharing and curation of data. We present Global Natural Products Social Molecular Networking (GNPS; http://gnps.ucsd.edu), an open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations. Data-driven social-networking should facilitate identification of spectra and foster collaborations. We also introduce the concept of `living data' through continuous reanalysis of deposited data. (AU)

FAPESP's process: 14/18052-0 - Tissue localization of tannins and Anthraquinones acting on gastrointestinal system
Grantee:Daniel Pecoraro Demarque
Support type: Scholarships in Brazil - Doctorate
FAPESP's process: 14/01884-2 - Analysis of metabolite profiles obtained by mass spectrometry using graphs
Grantee:Ricardo Roberto da Silva
Support type: Scholarships in Brazil - Post-Doctorate
FAPESP's process: 13/16496-5 - In vitro, in vivo metabolism and pharmacokinetic profile evaluation of the alkaloid govaniadine
Grantee:Lucas Maciel Mauriz Marques
Support type: Scholarships in Brazil - Doctorate
FAPESP's process: 14/50265-3 - Distribution and metabolism of natural and synthetic xenobiotics: from the comprehension of reactional process to tissue imaging generation
Grantee:Norberto Peporine Lopes
Support type: BIOTA-FAPESP Program - Thematic Grants
FAPESP's process: 14/01651-8 - Elicitation of natural products biosynthesis from endophytic microorganisms' interactions
Grantee:Andrés Mauricio Caraballo Rodríguez
Support type: Scholarships abroad - Research Internship - Doctorate
FAPESP's process: 12/18031-7 - Application of MALDI-MS/MS in the vicenin-2 and derivatives analyses: understanding the ionization processes to production of the images
Grantee:Denise Brentan da Silva
Support type: Scholarships in Brazil - Post-Doctorate