Biodiversity and functional activities of microorganisms from mangrove of the State of São Paulo

• Grant number: 04/13910-6
• Support Opportunities: BIOTA-FAPESP Program - Thematic Grants
• Start date: May 01, 2006
• End date: June 30, 2011
• Field of knowledge: Biological Sciences - Microbiology
• Principal Investigator: Itamar Soares de Melo
• Grantee: Itamar Soares de Melo
• Host Institution: Embrapa Meio-Ambiente. Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA). Ministério da Agricultura, Pecuária e Abastecimento (Brasil). Jaguariúna , SP, Brazil
• Pesquisadores principais: João Lúcio de Azevedo
• Associated research grant(s): 06/59836-7 - Paul Pare | Texas Tech University - United States, AV.EXT
• Associated scholarship(s): 09/06601-0 - Characterization of methanotrophic community and its isolates from Bertioga´s mangroves, São Paulo, BP.MS; 08/54013-8 - Diversity of archaea and bacteria involved in the nitrogen cycling in mangrove sediments, BP.DR; 07/08354-5 - Assessment of the genetic diversity of cyanobacteria from São Paulo State mangroves using DGGE and library of 16S rDNA gene, BP.DR; + associated scholarships 07/06360-8 - Genetic characterization of cyanobacteria isolated from mangrove of São Paulo State based on nifH and cpcBA-IGS nucleotide sequence, BP.MS; 06/52689-9 - Diversity of endophytic bacteria of red mangrove (Rhizophora mangle) and evaluation of the biotechnological potential, BP.MS; 06/57060-1 - Analysis of the bacterial community associated with mangroves in the State of São Paulo of biotechnological and agricultural interest, BP.PD - associated scholarships

Abstract

Mangrove communities are recognized as highly productive ecosystems that provide large quantities of organic matter to adjacent coastal waters in the form of detritus. The detritus serves as a nutrient source and is the base of an extensive food web in which organisms of commercial importance take part. The collective term mangrove designates an interdital wetland ecosystem formed by a very special association of plants and animals, fungi, bacteria, microalgae, invertebrates etc, which proliferate luxuriantly in the coastal areas and rivers estuaries. Mangrove ecosystems cover roughly 60 - 75% of the world's tropical and subtropical coastlines. Brazil, Indonesia, and Australia have the greatest abundance of mangrove. These wetland ecosystems are among the most productive and diverse in the world and more than 80% of marine catches are directly or indirectly dependent on mangrove and other coastal ecosystems worldwide. There is evidence to propose a close microbe-nutrient-plant relationship that functions as a mechanism to recycle and conserve nutrients in the mangrove ecosystem. Although mangrove ecosystems are rich in organic matter, in general they are nutrient-deficient, especially of nitrogen and phosphorus. In spite of this, mangroves are highly productive. This paradox may be explained by a very efficient nutrient recycling system in which scarce essential nutrients are retained and new nutrients are regenerated from decomposing mangrove leaves. Microbial activity is responsible for major nutrient transformations within a mangrove ecosystem. In tropical mangroves, bacteria and fungi constitute 91% of the total microbial biomas, whereas algae and protozoa represent only 7% and 2%. Despite numerous studies on biogeography, botany, zoology and economic impact, little is known about the biodiversity and activities of microbes in mangrove waters, sediments and rhizosphere. Microorganisms from mangroves open up new areas of biotechnological exploitations, which drive the necessity to isolate and culture these organisms. The biochemical versatility and diversity of rare microorganisms represent an enormous variety of genes that are still unknown. More and more useful gene functions are being discovered, particularly for environmental remediation and industrial processes. Thus, this project proposes: to study the biological diversity of microorganisms from sediments, rhizosphere and endophytes of red mangrove (considering both number of species and the partition of abundance)... (AU)

Scientific publications

(37)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

GENUARIO, DIEGO BONALDO; MARCAL VIEIRA VAZ, MARCELO GOMES; HENTSCHKE, GUILHERME SCOTTA; SANT'ANNA, CELIA LEITE; FIORE, MARLI FATIMA. Halotia gen. nov., a phylogenetically and physiologically coherent cyanobacterial genus isolated from marine coastal environments. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v. 65, n. 2, p. 663-675, FEB 2015. (10/18732-0, 10/00321-3, 04/13910-6)

FÁBIO LINO SOARES JÚNIOR; ARMANDO CAVALCANTE FRANCO DIAS; CRISTIANE CIPOLA FASANELLA; RODRIGO GOUVÊA TAKETANI; ANDRÉ OLIVEIRA DE SOUZA LIMA; ITAMAR SOARES MELO; FERNANDO DINI ANDREOTE. Endo-and exoglucanase activities in bacteria from mangrove sediment. Brazilian Journal of Microbiology, v. 44, n. 3, p. 969-976, 2013-09-00. (08/54013-8, 04/13910-6)

DE SOUZA SEBASTIANES, FERNANDA LUIZA; ROMAO-DUMARESQ, ALINE SILVA; LACAVA, PAULO TEIXEIRA; HARAKAVA, RICARDO; AZEVEDO, JOAO LUCIO; DE MELO, ITAMAR SOARES; PIZZIRANI-KLEINER, ALINE APARECIDA. Species diversity of culturable endophytic fungi from Brazilian mangrove forests. CURRENT GENETICS, v. 59, n. 3, p. 153-166, AUG 2013. (04/13910-6, 06/57060-1)

DIAS, ARMANDO C. F.; ANDREOTE, FERNANDO DINI; DINI-ANDREOTE, FRANCISCO; LACAVA, PAULO T.; SA, ANDRE L. B.; MELO, ITAMAR S.; AZEVEDO, JOO L.; ARAUJO, WELINGTON L.. Diversity and biotechnological potential of culturable bacteria from Brazilian mangrove sediment. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, v. 25, n. 7, p. 1305-1311, JUL 2009. (04/13910-6, 06/57060-1)

FASANELLA, CRISTIANE CIPOLA; FRANCO DIAS, ARMANDO CAVALCANTE; RIGONATO, JANAINA; FIORE, MARLI DE FATIMA; SOARES, JR., FABIO LINO; MELO, ITAMAR SOARES; PIZZIRANI-KLEINER, ALINE APARECIDA; VAN ELSAS, JAN DIRK; ANDREOTE, FERNANDO DINI. The Selection Exerted by Oil Contamination on Mangrove Fungal Communities. WATER AIR AND SOIL POLLUTION, v. 223, n. 7, p. 4233-4243, SEP 2012. (04/13910-6, 08/54013-8)

FRANCO DIAS, ARMANDO CAVALCANTE; PEREIRA E SILVA, MICHELE DE CASSIA; COTTA, SIMONE RAPOSO; DINI-ANDREOTE, FRANCISCO; SOARES, JR., FABIO LINO; SALLES, JOANA FALCAO; AZEVEDO, JOAO LUCIO; VAN ELSAS, JAN DIRK; ANDREOTE, FERNANDO DINI. Abundance and Genetic Diversity of nifH Gene Sequences in Anthropogenically Affected Brazilian Mangrove Sediments. Applied and Environmental Microbiology, v. 78, n. 22, p. 7960-7967, NOV 2012. (04/13910-6, 08/54013-8)

BRUM, M. C. P.; ARAUJO, W. L.; MAKI, C. S.; AZEVEDO, J. L.. Endophytic fungi from Vitis labrusca L. ('Niagara Rosada') and its potential for the biological control of Fusarium oxysporum. Genetics and Molecular Research, v. 11, n. 4, p. 4187-4197, 2012. (04/13910-6)

MENDES, LUCAS WILLIAM; TSAI, SIU MUI. Distinct taxonomic and functional composition of soil microbiomes along the gradient forest-restinga-mangrove in southeastern Brazil. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, v. 111, n. 1, p. 101-114, JAN 2018. (04/13910-6)

FRANCO DIAS, ARMANDO CAVALCANTE; DINI-ANDREOTE, FRANCISCO; TAKETANI, RODRIGO GOUVEA; TSAI, SIU MUI; AZEVEDO, JOAO LUCIO; DE MELO, ITAMAR SOARES; ANDREOTE, FERNANDO DINI. Archaeal communities in the sediments of three contrasting mangroves. Journal of Soils and Sediments, v. 11, n. 8, p. 1466-1476, DEC 2011. (04/13910-6, 08/54013-8)

ARMANDO CAVALCANTE FRANCO DIAS; RODRIGO GOUVEIA TAKETANI; FERNANDO DINI ANDREOTE; DANICE MAZZER LUVIZOTTO; JOÃO LUIS DA SILVA; ROSELY DOS SANTOS NASCIMENTO; ITAMAR SOARES DE MELO. Interspecific variation of the bacterial community structure in the phyllosphere of the three major plant components of mangrove forests. Brazilian Journal of Microbiology, v. 43, n. 2, p. 653-660, 2012-06-00. (04/13910-6)

SEBASTIANES, FERNANDA L. S.; LACAVA, PAULO T.; FAVARO, LEIA C. L.; RODRIGUES, MARIA B. C.; ARAUJO, WELINGTON L.; AZEVEDO, JOAO L.; PIZZIRANI-KLEINER, ALINE A.. Genetic transformation of Diaporthe phaseolorum, an endophytic fungus found in mangrove forests, mediated by Agrobacterium tumefaciens. CURRENT GENETICS, v. 58, n. 1, p. 21-33, FEB 2012. (04/13910-6, 06/57060-1)

CASTRO, RENATA A.; QUECINE, MARIA CAROLINA; LACAVA, PAULO T.; BATISTA, BRUNA D.; LUVIZOTTO, DANICE M.; MARCON, JOELMA; FERREIRA, ANDERSON; MELO, ITAMAR S.; AZEVEDO, JOAO L.. Isolation and enzyme bioprospection of endophytic bacteria associated with plants of Brazilian mangrove ecosystem. SPRINGERPLUS, v. 3, JUL 28 2014. (11/18740-5, 11/05204-8, 04/13910-6)

RIGONATO, JANAINA; ALVARENGA, DANILLO OLIVEIRA; ANDREOTE, FERNANDO DINI; FRANCO DIAS, ARMANDO CAVALCANTE; MELO, ITAMAR SOARES; KENT, ANGELA; FIORE, MARLI FATIMA. Cyanobacterial diversity in the phyllosphere of a mangrove forest. FEMS MICROBIOLOGY ECOLOGY, v. 80, n. 2, p. 312-322, MAY 2012. (08/54013-8, 04/13910-6, 07/08354-5)

PAMPLONA SILVA, CAROLINE SOUZA; GENUARIO, DIEGO BONALDO; MARCAL VIEIRA VAZ, MARCELO GOMES; FIORE, MARLI FATIMA. Phylogeny of culturable cyanobacteria from Brazilian mangroves. Systematic and Applied Microbiology, v. 37, n. 2, p. 100-112, MAR 2014. (06/01671-2, 10/18732-0, 10/00321-3, 04/13910-6)

DO CARMO LINHARES, DEBORA; SAIA, FLAVIA TALARICO; DUARTE, RUBENS TADEU DELGADO; NAKAYAMA, CRISTINA ROSSI; DE MELO, ITAMAR SOARES; PELLIZARI, VIVIAN HELENA. Methanotrophic Community Detected by DNA-SIP at Bertioga's Mangrove Area, Southeast Brazil. MICROBIAL ECOLOGY, v. 81, n. 4, JAN 2021. (04/13910-6, 09/06601-0)

RIGONATO, JANAINA; KENT, ANGELA D.; GUMIERE, THIAGO; ZANINI BRANCO, LUIZ HENRIQUE; ANDREOTE, FERNANDO DINI; FIORE, MARLI FATIMA. Temporal assessment of microbial communities in soils of two contrasting mangroves. Brazilian Journal of Microbiology, v. 49, n. 1, p. 10-pg., 2018-01-01. (04/13910-6, 07/08354-5, 13/18529-8)

GENUARIO, DIEGO BONALDO; MARCAL VIEIRA VAZ, MARCELO GOMES; HENTSCHKE, GUILHERME SCOTTA; SANT'ANNA, CELIA LEITE; FIORE, MARLI FATIMA. Halotia gen. nov., a phylogenetically and physiologically coherent cyanobacterial genus isolated from marine coastal environments. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v. 65, p. 13-pg., 2015-02-01. (04/13910-6, 10/00321-3, 10/18732-0)

JIMENEZ, DIEGO JAVIER; DINI-ANDREOTE, FRANCISCO; OTTONI, JULIA RONZELLA; DE OLIVEIRA, VALERIA MAIA; VAN ELSAS, JAN DIRK; ANDREOTE, FERNANDO DINI. Compositional profile of alpha/beta-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites. MICROBIAL BIOTECHNOLOGY, v. 8, n. 3, p. 10-pg., 2015-05-01. (04/13910-6, 12/06245-2)

MARTINHO, VIVIAN; DOS SANTOS LIMA, LIDIANE MARIA; BARROS, CAROLINE ALMEIDA; FERRARI, VITOR BAPTISTA; ZAMBRANO PASSARINI, MICHEL RODRIGO; SANTOS, LEONARDO ANDRE; DE SOUZA SEBASTIANES, FERNANDA LUISA; LACAVA, PAULO TEIXEIRA; DE VASCONCELLOS, SUZAN PANTAROTO. Enzymatic potential and biosurfactant production by endophytic fungi from mangrove forest in Southeastern Brazil. AMB EXPRESS, v. 9, n. 1, AUG 19 2019. (04/13910-6, 16/23685-7)

MAROLDI, M. M. C.; VASCONCELLOS, V. M.; LACAVA, P. T.; FARINAS, C. S.. Potential of Mangrove-Associated Endophytic Fungi for Production of Carbohydrolases with High Saccharification Efficiency. Applied Biochemistry and Biotechnology, v. 184, n. 3, p. 806-820, MAR 2018. (16/10636-8, 06/57060-1, 04/13910-6, 14/19000-3)

SOARES JUNIOR, FABIO LINO; FRANCO DIAS, ARMANDO CAVALCANTE; FASANELLA, CRISTIANE CIPOLA; TAKETANI, RODRIGO GOUVAA; DE SOUZA LIMA, ANDRE OLIVEIRA; MELO, ITAMAR SOARES; ANDREOTE, FERNANDO DINI. Endo- and exoglucanase activities in bacteria from mangrove sediment. Brazilian Journal of Microbiology, v. 44, n. 3, p. 8-pg., 2013-07-01. (04/13910-6, 08/54013-8)

ALVARENGA, DANILLO OLIVEIRA; RIGONATO, JANAINA; HENRIQUE, LUIS; BRANCO, ZANINI; MELO, ITAMAR SOARES; FIORE, MARLI FATIMA. Phyllonema aviceniicola gen. nov., sp nov and Foliisarcina bertiogensis gen. nov., sp nov., epiphyllic cyanobacteria associated with Avicennia schaueriana leaves. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v. 66, n. 2, p. 689-700, FEB 2016. (04/13910-6, 13/09192-0)

ALVARENGA, DANILLO OLIVEIRA; RIGONATO, JANAINA; ZANINI BRANCO, LUIS HENRIQUE; FIORE, MARLI FATIMA. Cyanobacteria in mangrove ecosystems. Biodiversity and Conservation, v. 24, n. 4, SI, p. 799-817, APR 2015. (04/13910-6)

JIMENEZ, DIEGO JAVIER; DINI-ANDREOTE, FRANCISCO; OTTONI, JULIA RONZELLA; DE OLIVEIRA, VALERIA MAIA; VAN ELSAS, JAN DIRK; ANDREOTE, FERNANDO DINI. Compositional profile of alpha/beta-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites. MICROBIAL BIOTECHNOLOGY, v. 8, n. 3, p. 604-613, MAY 2015. (04/13910-6, 12/06245-2)

RIGONATO, JANAINA; KENT, ANGELA D.; GUMIERE, THIAGO; ZANINI BRANCO, LUIZ HENRIQUE; ANDREOTE, FERNANDO DINI; FIORE, MARLI FATIMA. Temporal assessment of microbial communities in soils of two contrasting mangroves. Brazilian Journal of Microbiology, v. 49, n. 1, p. 87-96, JAN-MAR 2018. (07/08354-5, 13/18529-8, 04/13910-6)

LUVIZOTT, DANICE M.; ARAUJO, JULIANA E.; SILVA, MICHELE DE CASSIA P.; DIAS, ARMANDO C. F.; KRAFT, BEATE; TEGETMEYE, HALINA; STROUS, MARC; ANDREOTE, FERNANDO D.. The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils. Anais da Academia Brasileira de Ciências, v. 91, n. 1, 2019. (04/13910-6, 15/01290-8, 12/06245-2)

FARIA, DEISE CRISTINA; FRANCO DIAS, ARMANDO CAVALCANTE; MELO, ITAMAR SOARES; DE CARVALHO COSTA, FRANCISCO EDUARDO. Endophytic bacteria isolated from orchid and their potential to promote plant growth. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, v. 29, n. 2, p. 217-221, FEB 2013. (04/13910-6, 08/54013-8)

MENDES, LUCAS WILLIAM; TAKETANI, RODRIGO GOUVEA; NAVARRETE, ACACIO APARECIDO; TSAI, SIU MUI. Shifts in phylogenetic diversity of archaeal communities in mangrove sediments at different sites and depths in southeastern Brazil. Research in Microbiology, v. 163, n. 5, p. 366-377, JUN 2012. (04/13910-6)

BRAGHINI SA, ANDRE LUIS; FRANCO DIAS, ARMANDO CAVALCANTE; QUECINE, MARIA CAROLINA; COTTA, SIMONE RAPOSO; FASANELLA, CRISTIANE CIPOLA; ANDREOTE, FERNANDO DINI; DE MELO, ITAMAR SOARES. Screening of endoglucanase-producing bacteria in the saline rhizosphere of Rhizophora mangle. Brazilian Journal of Microbiology, v. 45, n. 1, p. 193-197, 2014. (04/13910-6, 08/54013-8)

VARON-LOPEZ, MARYEIMY; FRANCO DIAS, ARMANDO CAVALCANTE; FASANELLA, CRISTIANE CIPOLLA; DURRER, ADEMIR; MELO, ITAMAR SOARES; KURAMAE, EIKO EURYA; ANDREOTE, FERNANDO DINI. Sulphur-oxidizing and sulphate-reducing communities in Brazilian mangrove sediments. ENVIRONMENTAL MICROBIOLOGY, v. 16, n. 3, p. 845-855, MAR 2014. (04/13910-6)

RIGONATO, JANAINA; KENT, ANGELA D.; ALVARENGA, DANILLO O.; ANDREOTE, FERNANDO D.; BEIRIGO, RAPHAEL M.; VIDAL-TORRADO, PABLO; FIORE, MARLI F.. Drivers of cyanobacterial diversity and community composition in mangrove soils in south-east Brazil. ENVIRONMENTAL MICROBIOLOGY, v. 15, n. 4, p. 1103-1114, APR 2013. (07/08354-5, 04/13910-6)

DEZAM, A. P. G.; VASCONCELLOS, V. M.; LACAVA, P. T.; FARINAS, C. S.. Microbial production of organic acids by endophytic fungi. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY, v. 11, p. 282-287, JUL 2017. (16/10636-8, 06/57060-1, 04/13910-6, 14/19000-3)

SEBASTIANES, FERNANDA L. S.; CABEDO, NURIA; EL AOUAD, NOUREDDINE; VALENTE, ANGELA M. M. P.; LACAVA, PAULO T.; AZEVEDO, JOAO L.; PIZZIRANI-KLEINER, ALINE A.; CORTES, DIEGO. 3-Hydroxypropionic Acid as an Antibacterial Agent from Endophytic Fungi Diaporthe phaseolorum. Current Microbiology, v. 65, n. 5, p. 622-632, NOV 2012. (04/13910-6, 06/57060-1)

ANDREOTE, FERNANDO DINI; JAVIER JIMENEZ, DIEGO; CHAVES, DIEGO; FRANCO DIAS, ARMANDO CAVALCANTE; LUVIZOTTO, DANICE MAZZER; DINI-ANDREOTE, FRANCISCO; FASANELLA, CRISTIANE CIPOLA; LOPEZ, MARYEIMY VARON; BAENA, SANDRA; TAKETANI, RODRIGO GOUVEA; et al. The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics. PLoS One, v. 7, n. 6, JUN 21 2012. (04/13910-6, 08/54013-8)

DIAS, ARMANDO C. F.; ANDREOTE, FERNANDO D.; RIGONATO, JANAINA; FIORE, MARLI FATIMA; MELO, ITAMAR S.; ARAUJO, WELINGTON LUIZ. The bacterial diversity in a Brazilian non-disturbed mangrove sediment. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, v. 98, n. 4, p. 541-551, NOV 2010. (07/08354-5, 04/13910-6)

ALVARENGA, DANILLO OLIVEIRA; RIGONATO, JANAINA; BRANCO, LUIS HENRIQUE ZANINI; MELO, ITAMAR SOARES; FIORE, MARLI FATIMA. Phyllonema aviceniicola gen. nov., sp nov and Foliisarcina bertiogensis gen. nov., sp nov., epiphyllic cyanobacteria associated with Avicennia schaueriana leaves. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v. 66, p. 12-pg., 2016-02-01. (04/13910-6, 13/09192-0)

ALVARENGA, DANILLO OLIVEIRA; RIGONATO, JANAINA; ZANINI BRANCO, LUIS HENRIQUE; FIORE, MARLI FATIMA. Cyanobacteria in mangrove ecosystems. BIODIVERSITY AND CONSERVATION, v. 24, n. 4, p. 19-pg., 2015-04-01. (04/13910-6)