Use of (meta) genomics and microbial consortia for the creation of enzymatic cocktail for the production of metabolites of industrial interest through the lignocellulosic biomass biorefinery

• Grant number: 19/20825-0
• Support Opportunities: Program for Research on Bioenergy (BIOEN) - Thematic Grants
• Start date: March 01, 2022
• End date: February 28, 2027
• Field of knowledge: Biological Sciences - Microbiology - Applied Microbiology
• Principal Investigator: Eliana Gertrudes de Macedo Lemos
• Grantee: Eliana Gertrudes de Macedo Lemos
• Host Institution: Faculdade de Ciências Agrárias e Veterinárias (FCAV). Universidade Estadual Paulista (UNESP). Campus de Jaboticabal. Jaboticabal , SP, Brazil
• Pesquisadores principais: Eleni Gomes ; Lúcia Maria Carareto Alves
• Associated researchers: Alessandro de Mello Varani ; Camila Cesario Fernandes ; Gustavo Orlando Bonilla Rodriguez ; João Carlos Campanharo ; João Martins Pizauro Junior ; Manoel Victor Franco Lemos ; Milena Tavares Lima Constancio ; Pedro Manuel Henriques Marques Matias ; Roberto da Silva ; Tereza Cristina Luque Castellane ; Thiago Olitta Basso
• Associated research grant(s): 22/02531-2 - Multi-user equipment approved in grant 2019/20825-0: Ultra High Efficiency Liquid Chromatography System - HPLC, AP.EMU
• Associated scholarship(s): 24/07013-5 - Identification of Bacteria producing enzymes with potential in the bioremediation of herbicides, BP.IC; 23/07808-5 - SCREENING, CLONING, PURIFICATION, CHARACTERIZATION AND SYNERGIC ACTION OF AN ENDOGLUCANASE FROM Bacillus bombysepticus, BP.IC; 22/13149-1 - BIOMASS BIOREFINARY FOR RARE SUGAR PRODUCTION, BP.PD; 22/05292-9 - OPTIMIZATION OF METHODS OF OBTAINING PURIFIED PROTEINS IN SOLUBLE FRACTION, BP.TT

Abstract

The microbiota is an abundant source of genes for industrial application. In forty years of work, we have assembled a collection of diverse genomes, metagenomas and consortia. Among these data, we have metagenomas from forest soils, sugarcane and eucalyptus cultivation soils, rumen, filter cake, and ecosystems in different stages of recovery from mining activity (Sabará, MG); sequenced genomes such as those of the bacteria Chitinophaga sp. CB10, Mesorhizobium sp. J5 and Thermomonospora sp. CIT 1; in addition to bacterial pools of soils contaminated with diesel oil and sugarcane cultivation. The latter is able to develop effectively in a culture medium containing only sugarcane bagasse as a carbon source, causing significant decreases in the contents of cellulose, hemicellulose and lignin, as well as partial disruption of the planar and compact microstructure of the bagasse, with the presence of cracks and flaking after five days of cultivation, which can be useful as a form of pre-treatment of biomass. In view of this, we propose studies aimed at the production of enzymatic cocktails to obtain biotechnological products such as fermentable sugars and rare sugars such as tagatose and xylitol, and phenolic derivatives from lignocellulose. Under this approach, an initial cocktail of three enzymes capable of depolymerizing bagasse will be used as a starting point for the optimization of these processes of interest through combination with different enzymes and engineering of cavity and active site architecture. This pre-cocktail contains a potentially progressive endoglucanase from CB10, and a wide temperature spectrum acid laccase and a beta-glucosidase stimulated by its product (glucose) and tolerant to ethanol (both from eucalyptus soil metagenome). Allied to this, we propose the characterization of the metabolic network of the sugarcane soil consortium, contributing to the identification of biotechnological biomass refinery pathways. (AU)

Scientific publications

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

BUZZO, BARBARA BONFA; GIULIATTI, SILVANA; PEREIRA, PAMELA APARECIDA MALDANER; GOMES-PEPE, ELISANGELA SOARES; LEMOS, ELIANA GERTRUDES DE MACEDO. Molecular Docking of Lac_CB10: Highlighting the Great Potential for Bioremediation of Recalcitrant Chemical Compounds by One Predicted Bacteroidetes CopA-Laccase. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 24, n. 12, p. 22-pg., 2023-06-01. (19/20825-0)

LIMA, NATALIA SARMANHO MONTEIRO; GOMES-PEPE, ELISANGELA SOARES; KOCK, FLAVIO VINICIUS CRIZOSTOMO; COLNAGO, LUIZ ALBERTO; LEMOS, ELIANA GERTRUDES DE MACEDO. Dynamics of the role of LacMeta laccase in the complete degradation and detoxification of malachite green. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, v. 39, n. 5, p. 13-pg., 2023-05-01. (19/23014-3, 19/20825-0, 11/10981-3)

BUZZO, BARBARA BONFA; LIMA, NATALIA SARMANHO MONTEIRO; PEREIRA, PAMELA APARECIDA MALDANER; GOMES-PEPE, ELISANGELA SOARES; SARTINI, CAMILA CESARIO FERNANDES; LEMOS, ELIANA GERTRUDES DE MACEDO. Lignin degradation by a novel thermophilic and alkaline yellow laccase from Chitinophaga sp.. MICROBIOLOGY SPECTRUM, v. 12, n. 6, p. 16-pg., 2024-05-07. (19/20825-0)