Research Grants 14/06570-6 - Endocrinologia, Neoplasias da glândula tireoide - BV FAPESP
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Comprehensive whole exome, paired-end RNA and genome sequencing: new insights into genetic bases of thyroid carcinoma in pediatric and adult ages and applications in clinical practice

Grant number: 14/06570-6
Support Opportunities:Research Projects - Thematic Grants
Start date: October 01, 2015
End date: February 28, 2021
Field of knowledge:Health Sciences - Medicine - Medical Clinics
Principal Investigator:Janete Maria Cerutti
Grantee:Janete Maria Cerutti
Host Institution: Escola Paulista de Medicina (EPM). Universidade Federal de São Paulo (UNIFESP). Campus São Paulo. São Paulo , SP, Brazil
Pesquisadores principais:
Magnus Régios Dias da Silva ; Rui Monteiro de Barros Maciel
Associated researchers: Adriano Namo Cury ; Gianna Maria Griz Carvalheira ; Gilles Landman ; Nilson Ivo Tonin Zanchin ; Pedro Alexandre Favoretto Galante ; Victor Piana de Andrade
Associated scholarship(s):20/06594-3 - Liquid biopsy as a non-invasive diagnostic and prognostic of thyroid tumors tool, BP.DD
18/13203-0 - New insights into the prognosis of papillary thyroid microcarcinoma: mutational status analysis of BRAF V600E and whole exome sequencing, BP.DD
18/09911-0 - AGK-BRAF in pediatric papillary thyroid carcinoma: investigation of the mechanism associated with the high rate and functional analysis, BP.DR
+ associated scholarships 17/12107-5 - Investigation of molecular markers for the diagnosis of MEN 2 through metabolic profile of HEK293 cells with RET expression and MEN 2/RET patients, BP.DR
17/14948-7 - Study of LIMD2 role on thyroid cancer epithelial-mesenchymal transition, BP.PD
15/13413-7 - Investigation of chromosomal rearrangements in the BRAF gene in differentiated thyroid carcinomas in childhood, BP.MS
12/17545-7 - Molecular Characterization of thyroid tumors using whole exome sequencing: Search for diagnostic molecular markers, BP.PD - associated scholarships

Abstract

The prevalence of thyroid nodules depends on several factors such as age, population studied, sex and method of evaluation. Due to the use of high-resolution ultrasound, which can detect nodules as small as 2 mm, the prevalence of thyroid nodules has increased, reaching up to 67 %. As a consequence of the increase in the diagnosis of the nodules, we also observed an increased incidence of thyroid cancer. Currently, thyroid cancer is the fastest growing cancer incidence worldwide. According to the National Cancer Institute (INCA), thyroid neoplasms represent 5.6% of cancers in women, currently being the fourth most common type of cancer in the female Brazilian adult population. It is suggested that this trend is directly related to the increased frequency of papillary thyroid carcinoma and its variants. In fact, approximately 50 % of the increase was at the expense of the diagnosis of micropapillary carcinomas (tumors d 1 cm). Similar to adults, the incidence rate of pediatric thyroid cancer has also increased, being the papillary histological type the most prevalent subtype. This project will address clinical problems related to diagnosis and prognosis of thyroid nodules. Primarily, we sought to identify new genetic events associated with the genesis of different thyroid carcinoma subtypes that can be used as preoperative diagnostic markers that can help the distinction of nodules commonly classified as indeterminate that occur both in the adult or pediatric ages. We believe that the identification of these new markers will enable us to develop a diagnostic test, which may have increased sensitivity and specificity of the tests currently available. Also aims to identify markers capable of predicting the prognosis of thyroid nodules, particularly micropapillary carcinomas. It also seeks to contribute to the determination of genetic events associated with the genesis and progression of medullary thyroid carcinoma occurring in sporadic and hereditary forms. As a strategy to identify new recurrent somatic mutations and/or gene fusion events, we will use whole exome sequencing and/or RNA (paired-end RNA sequencing) or Target Ressenquencing, since 85% of the disease-causing mutations are located in coding regions of the genome. These strategies have achieved high levels of success in identifying genes associated with diseases, especially in cancer. In addition to identifying new genetic events, this project also aims to characterize the signaling pathway associated with new genes and new mutations previously identified in thyroid cancer by our group. This is an innovative proposal whose results may have immediate clinical application, as well as may contribute in the identification of new signaling pathways involved in the genesis and progression of tumors of the thyroid and thus open new perspectives for targeted therapy. (AU)

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Scientific publications (31)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
MACIEL, RUI M. B.; CAMACHO, CLEBER P.; ASSUMPCAO, LIGIA V. M.; BUFALO, NATASSIA E.; CARVALHO, ANDRE L.; DE CARVALHO, GISAH A.; CASTRONEVES, LUCIANA A.; DE CASTRO JR, FRANCISCO M.; CEOLIN, LUCIELI; CERUTTI, JANETE M.; et al. Genotype and phenotype landscape of MEN2 in 554 medullary thyroid cancer patients: the BrasMEN study. ENDOCRINE CONNECTIONS, v. 8, n. 3, p. 289-298, . (14/06570-6, 06/60402-1, 13/01476-9, 12/21942-1)
BIM, LARISSA V.; NAVARRO, FABIO C. P.; VALENTE, FLAVIA O. F.; LIMA-JUNIOR, JOSE V.; DELCELO, ROSANA; DIAS-DA-SILVA, MAGNUS R.; MACIEL, RUI M. B.; GALANTE, PEDRO A. F.; CERUTTI, JANETE M.. Retroposed copies of RET gene: a somatically acquired event in medullary thyroid carcinoma. BMC MEDICAL GENOMICS, v. 12, . (12/24731-1, 14/06570-6)
MARTINS-COSTA, M. CECLIA; CUNHA, LUCAS L.; LINDSEY, SUSAN C.; CAMACHO, CLEBER P.; DOTTO, RENATA P.; FURUZAWA, GILBERTO K.; SOUSA, M. SHARMILA A.; KASAMATSU, TERESA S.; KUNII, ILDA S.; MARTINS, MRCIO M.; et al. M918V RET mutation causes familial medullary thyroid carcinoma: study of 8 affected kindreds. Endocrine-Related Cancer, v. 23, n. 12, p. 909-920, . (12/21942-1, 06/60402-1, 14/06570-6)
NOZIMA, BRUNO HEIDI; MENDES, THAIS BIUDE; DA SILVA PEREIRA, GUSTAVO JOSE; ARALDI, RODRIGO PINHEIRO; MIAZATO IWAMURA, EDNA SADAYO; SMAILI, SORAYA SOUBHI; GRIZ CARVALHEIRA, GIANNA MARIA; CERUTTI, JANETE MARIA. FAM129A regulates autophagy in thyroid carcinomas in an oncogene-dependent manner. Endocrine-Related Cancer, v. 26, n. 1, p. 227-238, . (14/06570-6, 13/03867-5)
BARBALHO DE MELLO, LUIS EDUARDO; ARAUJO, ALINE NEVES; ALVES, CAMILA XAVIER; PINTO DE PAIVA, FERNANDO JOSE; BRANDAO-NETO, JOSE; CERUTTI, JANETE M.. The G534E variant in HABP2 is not associated with increased risk of familial nonmedullary thyroid cancer in Brazilian Kindreds. CLINICAL ENDOCRINOLOGY, v. 87, n. 1, p. 113-114, . (14/06570-6)
RANGEL-POZZO, ALINE; SISDELLI, LUIZA; CORDIOLI, MARIA ISABEL V.; VAISMAN, FERNANDA; CARIA, PAOLA; MAI, SABINE; CERUTTI, JANETE M.. Genetic Landscape of Papillary Thyroid Carcinoma and Nuclear Architecture: An Overview Comparing Pediatric and Adult Populations. CANCERS, v. 12, n. 11, . (14/06570-6)
MACIEL, RUI M. B.; MAIA, ANA LUIZA. LOBAL ENDOCRINOLOGY: Geographical variation in the profile of RET variants in patients with medullary thyroid cancer: a comprehensive revie. EUROPEAN JOURNAL OF ENDOCRINOLOGY, v. 186, n. 1, p. R15-R30, . (13/01476-9, 14/06570-6, 06/60402-1)
ARAUJO, ALINE NEVES; CAMACHO, CLEBER PINTO; MENDES, THAIS BIUDE; LINDSEY, SUSAN CHOW; MORAES, LAIS; MIYAZAWA, MARTA; DELCELO, ROSANA; PELLEGRINO, RENATA; MAZZOTTI, DIEGO ROBLES; MACIEL, RUI MONTEIRO DE BARROS; et al. Comprehensive Assessment of Copy Number Alterations Uncovers Recurrent AIFM3 and DLK1 Copy Gain in Medullary Thyroid Carcinoma. CANCERS, v. 13, n. 2, . (10/13833-2, 14/06570-6, 17/06487-0, 12/02248-7)
LUCIANE SIMONETTI; MAGNUS REGIOS DIAS DA SILVA; CLAUDIA BERLIM DE MELLO. ESCOLARIDADE, REPOSIÇÃO DE TESTOSTERONA E DESFECHOS DE INTELIGÊNCIA NA SÍNDROME DE KLINEFELTER. Dement. Neuropsychol., v. 16, n. 1, p. 97-104, . (18/03511-0, 14/06570-6)
LICHTENECKER, DEBORA CONTE KIMURA; ARGERI, ROGERIO; CASTRO, CHARLLES HELDAN DE MOURA; DIAS-DA-SILVA, MAGNUS REGIOS; GOMES, GUIOMAR NASCIMENTO. Cross-sex testosterone therapy modifies the renal morphology and function in female rats and might underlie increased systolic pressure. Clinical and Experimental Pharmacology and Physiology, v. 48, n. 7, . (18/03511-0, 14/06570-6)
DE JESUS PANIZA, ANA CAROLINA; MENDES, THAIS BIUDE; BORGES VIANNA, MATHEUS DUARTE; DIAS THOMAZ, DEBORA MOTA; CHIAPPINI, PAULA B. O.; COLAZZA-GAMA, GABRIEL A.; LINDSEY, SUSAN CHOW; DE CARVALHO, MARCOS BRASILINO; FERREIRA ALVES, VENANCIO AVANCINI; CURIONI, OTAVIO; et al. Revised criteria for diagnosis of NIFTP reveals a better correlation with tumor biological behavior. ENDOCRINE CONNECTIONS, v. 8, n. 11, p. 1529-1538, . (17/06487-0, 14/06570-6, 16/25784-2, 17/16315-1)
RADONSKY, VANESSA; KIZYS, MARINA MALTA LETRO; DOTTO, RENATA PIRES; ESPER, PRISCILA LIGEIRO GONCALVES; HEILBERG, ITA PFEFERMAN; DIAS-DA-SILVA, MAGNUS REGIOS; LAZARETTI-CASTRO, MARISE. Hypomagnesemia with Hypercalciuria Leading to Nephrocalcinosis, Amelogenesis Imperfecta, and Short Stature in a Child Carrying a Homozygous Deletion in theCLDN16Gene. CALCIFIED TISSUE INTERNATIONAL, v. 107, n. 4, . (14/15948-2, 12/01628-0, 14/06570-6)
CORDIOLI, MARIA ISABEL C. V.; MORAES, LAIS; CARVALHEIRA, GIANNA; SISDELLI, LUIZA; ALVES, MARIA TERESA S.; DELCELO, ROSANA; MONTE, OSMAR; LONGUI, CARLOS A.; CURY, ADRIANO N.; CERUTTI, JANETE M.. AGK-BRAF gene fusion is a recurrent event in sporadic pediatric thyroid carcinoma. CANCER MEDICINE, v. 5, n. 7, p. 1535-1541, . (12/02902-9, 13/03867-5, 14/06570-6)
CARREGOSA PINHEIRO DOS SANTOS, MARIA JOSE; BASTOS, ANDRE UCHIMURA; DA COSTA, VITOR RODRIGUES; DELCELO, ROSANA; LINDSEY, SUSAN CHOW; COLOZZA-GAMA, GABRIEL AVELAR; PENG, HONGZHUANG; RAUSCHER, III, FRANK J.; OLER, GISELE; CERUTTI, JANETE MARIA. LIMD2 Is Overexpressed in BRAF V600E-Positive Papillary Thyroid Carcinomas and Matched Lymph Node Metastases. ENDOCRINE PATHOLOGY, v. 29, n. 3, p. 222-230, . (14/06570-6)
MACIEL, RUI M. B.; BIM, LARISSA V.; CAMACHO, CLEBER P.; CERUTTI, JANETE M.. Penetrance of phaeochromocytoma in RET G533C carriers differs between South America and Europe. Endocrine-Related Cancer, v. 25, n. 9, p. L49-L51, . (14/06570-6)
COLOZZA-GAMA, GABRIEL A.; CALLEGARI, FABIANO; BESIC, NIKOLA; PAVIZA, ANA C. DE J.; CERUTTI, JANETE M.. Machine learning algorithm improved automated droplet classification of ddPCR for detection of BRAF V600E in paraffin-embedded samples. SCIENTIFIC REPORTS, v. 11, n. 1, . (18/13203-0, 14/06570-6, 18/23497-1)
WILLIAMSON, TARA; MENDES, THAIS BIUDE; JOE, NATALIE; CERUTTI, JANETE M.; RIGGINS, GREGORY J.. Mebendazole inhibits tumor growth and prevents lung metastasis in models of advanced thyroid cancer. Endocrine-Related Cancer, v. 27, n. 3, p. 123-136, . (14/06570-6)
MENDES, THAIS BIUDE; NOZIMA, BRUNO HEIDI; BUDU, ALEXANDRE; DE SOUZA, RODRIGO BARBOSA; BRAGA CATROXO, MARCIA HELENA; DELCELO, ROSANA; GAZARINI, MARCOS LEONI; CERUTTI, JANETE MARIA. PVALB diminishes [Ca2+] and alters mitochondrial features in follicular thyroid carcinoma cells through AKT/GSK3 beta pathway. Endocrine-Related Cancer, v. 23, n. 9, p. 769-782, . (14/06570-6, 13/03867-5)
MACIEL, RUI M. B.; CAMACHO, CLEBER P.; ASSUMPCAO, LIGIA V. M.; BUFALO, NATASSIA E.; CARVALHO, ANDRE L.; DE CARVALHO, GISAH A.; CASTRONEVES, LUCIANA A.; DE CASTRO JR, FRANCISCO M.; CEOLIN, LUCIELI; CERUTTI, JANETE M.; et al. Genotype and phenotype landscape of MEN2 in 554 medullary thyroid cancer patients: the BrasMEN study. ENDOCRINE CONNECTIONS, v. 8, n. 3, p. 10-pg., . (13/01476-9, 14/06570-6, 12/21942-1, 06/60402-1)
RADONSKY, VANESSA; KIZYS, MARINA MALTA LETRO; DOTTO, RENATA PIRES; ESPER, PRISCILA LIGEIRO GONCALVES; HEILBERG, ITA PFEFERMAN; DIAS-DA-SILVA, MAGNUS REGIOS; LAZARETTI-CASTRO, MARISE. Hypomagnesemia with Hypercalciuria Leading to Nephrocalcinosis, Amelogenesis Imperfecta, and Short Stature in a Child Carrying a Homozygous Deletion in the CLDN16 Gene. CALCIFIED TISSUE INTERNATIONAL, v. 107, n. 4, p. 6-pg., . (14/06570-6, 12/01628-0, 14/15948-2)
DE JESUS PANIZA, ANA CAROLINA; MENDES, THAIS BIUDE; BORGES VIANNA, MATHEUS DUARTE; DIAS THOMAZ, DEBORA MOTA; CHIAPPINI, PAULA B. O.; COLAZZA-GAMA, GABRIEL A.; LINDSEY, SUSAN CHOW; DE CARVALHO, MARCOS BRASILINO; FERREIRA ALVES, VENANCIO AVANCINI; CURIONI, OTAVIO; et al. Revised criteria for diagnosis of NIFTP reveals a better correlation with tumor biological behavior. ENDOCRINE CONNECTIONS, v. 8, n. 11, p. 10-pg., . (14/06570-6, 16/25784-2, 17/16315-1, 17/06487-0)
ARALDI, RODRIGO PINHEIRO; KHALIL, CHARBEL; GRIGNET, PEDRO HENRIQUE; TEIXEIRA, MICHELLI RAMIRES; DE MELO, THATIANA CORREA; MODOLO, DIEGO GRANDO; VIRGILIO FERNANDES, LUIS GUILHERME; RUIZ, JORGE; DE SOUZA, EDISLANE BARREIROS. Medical applications of clustered regularly interspaced short palindromic repeats (CRISPR/Cas) tool: A comprehensive overview. Gene, v. 745, . (14/06570-6, 17/14948-7)
ARALDI, RODRIGO PINHEIRO; DE MELO, THATIANA CORREA; LEVY, DEBORA; DE SOUZA, DENER MADEIRO; MAURICIO, BEATRIZ; COLOZZA-GAMA, GABRIEL AVELAR; BYDLOWSKI, SERGIO PAULO; PENG, HONGZHUANG; RAUSCHER, III, FRANK J.; CERUTTI, JANETE MARIA. LIMD2 Regulates Key Steps of Metastasis Cascade in Papillary Thyroid Cancer Cells via MAPK Crosstalk. CELLS, v. 9, n. 11, . (17/14948-7, 14/06570-6, 18/13203-0)
SISDELLI, LUIZA; CUNHA VIEIRA CORDIOLI, MARIA ISABEL; VAISMAN, FERNANDA; MORAES, LAIS; COLOZZA-GAMA, GABRIEL AVELAR; ALVES, JR., PAULO ALONSO G.; ARAUJO, JR., MARIO LUCIO; SEIXAS ALVES, MARIA TERESA; MONTE, OSMAR; LONGUI, CARLOS ALBERTO; et al. AGK-BRAF is associated with distant metastasis and younger age in pediatric papillary thyroid carcinoma. PEDIATRIC BLOOD & CANCER, v. 66, n. 7, . (14/06570-6)
CARVALHEIRA, GIANNA; MALINVERNI, ANDREA M.; MOYSES-OLIVEIRA, MARIANA; UETA, RENATA; CARDILI, LEONARDO; MONTEAGUDO, PATRICIA; MATHEZ, ANDREIA L. G.; VERRESCHI, IEDA T.; MALUF, MIGUEL A.; SHIDA, MARCIA E. F.; et al. The Natural History of a Man With Ovotesticular 46,XX DSD Caused by a Novel 3-Mb 15q26.2 Deletion Containing NR2F2 Gene. JOURNAL OF THE ENDOCRINE SOCIETY, v. 3, n. 11, p. 2107-2113, . (14/11572-8, 11/20747-8, 12/00079-3, 14/06570-6)
VARGAS, MICHELLE CERUTTI C.; MOURA, FELIPE SCIPIAO; ELIAS, CECILIA P.; CARVALHO, SARA R.; RASSI, NELSON; KUNII, ILDA S.; DIAS-DA-SILVA, MAGNUS R.; COSTA-BARBOSA, FLAVIA AMANDA. Spontaneous fertility and variable spectrum of reproductive phenotype in a family with adult-onset X-linked adrenal insufficiency harboring a novel DAX-1/NR0B1 mutation. BMC Endocrine Disorders, v. 20, n. 1, . (11/20747-8, 14/06570-6)
CUNHA, LUCAS L.; LINDSEY, SUSAN C.; FRANCA, MARIA INEZ C.; SARIKA, LEDA; PAPATHOMA, ALEXANDRA; KUNII, ILDA S.; CERUTTI, JANETE M.; DIAS-DA-SILVA, MAGNUS R.; ALEVIZAKI, MARIA; MACIEL, RUI M. B.. Evidence for the founder effect of RET533 as the common Greek and Brazilian ancestor spreading multiple endocrine neoplasia 2A. EUROPEAN JOURNAL OF ENDOCRINOLOGY, v. 176, n. 5, p. 515-519, . (14/06570-6, 06/60402-1)
BIM, LARISSA VALDEMARIN; RIBEIRO CARNEIRO, THAISE NAYANE; BUZATTO, VANESSA CANDIOTTI; COLOZZA-GAMA, GABRIEL AVELAR; KOYAMA, FERNANDA C.; DIAS THOMAZ, DEBORA MOTA; DE JESUS PANIZA, ANA CAROLINA; LEE, EUNJUNG ALICE; FAVORETTO GALANTE, PEDRO ALEXANDRE; CERUTTI, JANETE MARIA. Molecular Signature Expands the Landscape of Driver Negative Thyroid Cancers. CANCERS, v. 13, n. 20, . (18/23497-1, 14/06570-6)
CARNEIRO, THAISE NAYANE RIBEIRO; BIM, LARISSA VALDEMARIN; BUZATTO, VANESSA CANDIOTTI; GALDENO, VANESSA; ASPRINO, PAULA FONTES; LEE, EUNJUNG ALICE; GALANTE, PEDRO ALEXANDRE FAVORETTO; CERUTTI, JANETE MARIA. Evidence of Cooperation between Hippo Pathway and RAS Mutation in Thyroid Carcinomas. CANCERS, v. 13, n. 10, . (14/06570-6)
BARBALHO DE MELLO, LUIS EDUARDO; RIBEIRO CARNEIRO, THAISE NAYANE; ARAUJO, ALINE NEVES; ALVES, CAMILA XAVIER; FAVORETTO GALANTE, PEDRO ALEXANDRE; BUZATTO, VANESSA CANDIOTTI; DE ALMEIDA, MARIA DAS GRACAS; VERMEULEN-SERPA, KARINA MARQUES; DE LIMA VALE, SANCHA HELENA; DE PINTO PAIVA, FERNANDO JOSE; et al. Identification of NID1 as a novel candidate susceptibility gene for familial non-medullary thyroid carcinoma using whole-exome sequencing. ENDOCRINE CONNECTIONS, v. 11, n. 1, p. 16-pg., . (18/15579-8, 14/06570-6, 18/23497-1)
DA COSTA, VITOR RODRIGUES; BIM, LARISSA VALDEMARIN; SILVA, LUIZA DORNELLES PENTEADO E; COLLOZA-GAMA, GABRIEL AVELAR; BASTOS, ANDRE UCHIMURA; DELCELO, ROSANA; OLER, GISELE; CERUTTI, JANETE MARIA. Advances in Detecting Low Prevalence Somatic TERT Promoter Mutations in Papillary Thyroid Carcinoma. FRONTIERS IN ENDOCRINOLOGY, v. 12, . (14/06570-6, 12/06221-6, 12/17545-7, 18/13203-0)

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