Metagenomic investigation of the microbiomes of plants adapted to phosphorus nutritional limitation

• Grant number: 18/04240-0
• Support Opportunities: Scholarships in Brazil - Doctorate
• Start date: July 01, 2018
• End date: February 28, 2021
• Field of knowledge: Biological Sciences - Genetics - Molecular Genetics and Genetics of Microorganisms
• Principal Investigator: Marcelo Falsarella Carazzolle
• Grantee: Antônio Pedro de Castello Branco da Rocha Camargo
• Host Institution: Instituto de Biologia (IB). Universidade Estadual de Campinas (UNICAMP). Campinas , SP, Brazil

Abstract

Phosphorus is an essential nutrient for plant development, thus it is intensely consumed by modern farming systems. In order to reduce dependence on phosphate fertilizers, an emerging strategy is utilization of inocula containing microorganisms capable of increasing phosphorus uptake by plants. Hence, plant microbiomes that colonize phosphorus-depleted soils represent a natural reservoir of microorganisms with biotechnological potential. In this context, we propose the bioinformatic investigation of the metagenomes of microbial communities associated with two plant species capable of growth in the phosphorus-impoverished soils of the Brazilian campos rupestres. Throughout the development of this project, genomic and transcriptomic sequencing data obtained from these communities will be analyzed with the goal of unveiling their taxonomic compositions and molecular mechanisms. With this knowledge, we hope to better understand the role of microbiomes in plant nutrition under phosphorus limitation and contribute to the development of new agricultural technologies. (AU)

Scientific publications

(9)

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

CAMARGO, ANTONIO PEDRO; CORREA DE SOUZA, RAFAEL SOARES; COSTA, PATRICIA DE BRITTO; GERHARDT, ISABEL RODRIGUES; DANTE, RICARDO AUGUSTO; TEODORO, GRAZIELLE SALES; ABRAHAO, ANNA; LAMBERS, HANS; CARAZZOLLE, MARCELO FALSARELLA; HUNTEMANN, MARCEL; et al. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. SCIENTIFIC DATA, v. 6, JUL 31 2019. (16/23218-0, 18/04240-0)

NAYFACH, STEPHEN; CAMARGO, ANTONIO PEDRO; SCHULZ, FREDERIK; ELOE-FADROSH, EMILEY; ROUX, SIMON; KYRPIDES, NIKOS C.. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. NATURE BIOTECHNOLOGY, v. 39, n. 5, DEC 2020. (16/23218-0, 18/04240-0)

PAPES, FABIO; CAMARGO, ANTONIO P.; DE SOUZA, JANAINA S.; CARVALHO, VINICIUS M. A.; SZETO, RYAN A.; LAMONTAGNE, ERIN; TEIXEIRA, JOSE R.; AVANSINI, SIMONI H.; SANCHEZ-SANCHEZ, SANDRA M.; NAKAHARA, THIAGO S.; et al. Transcription Factor 4 loss-of-function is associated with deficits in progenitor proliferation and cortical neuron content. NATURE COMMUNICATIONS, v. 13, n. 1, p. 26-pg., 2022-05-02. (20/11451-7, 18/04240-0, 18/03613-7)

DE CARVALHO, LUCAS M.; CARVALHO, VINICIUS M. A.; CAMARGO, ANTONIO P.; PAPES, FABIO. Gene network analysis identifies dysregulated pathways in an autism spectrum disorder caused by mutations in Transcription Factor 4. SCIENTIFIC REPORTS, v. 15, n. 1, p. 15-pg., 2025-02-10. (20/11451-7, 22/12762-1, 19/12914-3, 18/04240-0)

ALMEIDA, LUDIMILA DIAS; SILVA, ALI SALIM FARAJ; MOTA, DANIEL CALIXTO; VASCONCELOS, ADRIELLE AYUMI; CAMARGO, ANTONIO PEDRO; PIRES, GABRIEL SILVA; FURLAN, MONIQUE; FREIRE, HELENA MARTINS RIBEIRO DA CUNHA; KLIPPEL, ANGELICA HOLLUNDER; SILVA, SUELEN FERNANDES; et al. Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput. MBIO, v. 12, n. 6, NOV-DEC 2021. (17/13015-7, 19/14146-3, 17/01986-8, 18/04240-0, 18/05328-8, 18/16672-1, 15/03553-6, 19/17876-2)

VASCONCELOS, ADRIELLE A.; JOSE, JULIANA; TOKIMATU, PAULO M.; CAMARGO, ANTONIO P.; TEIXEIRA, PAULO J. P. L.; THOMAZELLA, DANIELA P. T.; DO PRADO, V, PAULA F.; FIORIN, GABRIEL L.; COSTA, JULIANA L.; FIGUEIRA, ANTONIO; et al. Adaptive evolution of Moniliophthora PR-1 proteins towards its pathogenic lifestyle. BMC ECOLOGY AND EVOLUTION, v. 21, n. 1, MAY 14 2021. (16/10498-4, 18/04240-0, 14/06181-0, 13/09878-9, 13/08293-7, 17/13015-7, 14/00802-2, 17/13319-6, 13/05979-5, 13/04309-6, 11/23315-1)

CAMARGO, ANTONIO P.; SOURKOV, VSEVOLOD; PEREIRA, GONCALO A. G.; CARAZZOLLE, MARCELO F.. RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences. NAR GENOMICS AND BIOINFORMATICS, v. 2, n. 1, p. 12-pg., 2020-03-01. (13/08293-7, 18/04240-0)

CAMARGO, ANTONIO P.; DE SOUZA, RAFAEL S. C.; JOSE, JULIANA; GERHARDT, ISABEL R.; DANTE, RICARDO A.; MUKHERJEE, SUPRATIM; HUNTEMANN, MARCEL; KYRPIDES, NIKOS C.; CARAZZOLLE, MARCELO F.; ARRUDA, PAULO. Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. ISME Journal, v. N/A, p. 17-pg., 2022-12-20. (18/19100-9, 18/04240-0, 16/23218-0)

ARONEY, SAMUEL T. N.; NEWELL, RHYS J. P.; NISSEN, JAKOB N.; CAMARGO, ANTONIO PEDRO; TYSON, GENE W.; WOODCROFT, BEN J.. CoverM: read alignment statistics for metagenomics. Bioinformatics, v. 41, n. 4, p. 4-pg., 2025-04-01. (18/04240-0)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

CAMARGO, Antônio Pedro de Castello Branco da Rocha. Metagenomic investigation of the microbiomes of plants adapted tonutritional limitation. 2021. Doctoral Thesis - Universidade Estadual de Campinas (UNICAMP). Instituto de Biologia Campinas, SP.