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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns

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Aono, Alexandre Hild [1] ; Gonzaga Pimenta, Ricardo Jose [1] ; Basso Garcia, Ana Letycia [2] ; Correr, Fernando Henrique [2] ; Hosaka, Guilherme Kenichi [2] ; Carrasco, Marishani Marin [1] ; Cardoso-Silva, Claudio Benicio [1] ; Mancini, Melina Cristina [1] ; Sforca, Danilo Augusto [1] ; dos Santos, Lucas Borges [1] ; Nagai, James Shiniti [3] ; Pinto, Luciana Rossini [4] ; de Andrade Landell, Marcos Guimaraes [4] ; Carneiro, Monalisa Sampaio [5] ; Balsalobre, Thiago Willian [5] ; Quiles, Marcos Goncalves [6] ; Pereira, Welison Andrade [7] ; Alves Margarido, Gabriel Rodrigues [2] ; de Souza, Anete Pereira [8, 1]
Total Authors: 19
Affiliation:
[1] Univ Estadual Campinas, Ctr Mol Biol & Genet Engn CBMEG, UNICAMP, Campinas, SP - Brazil
[2] Univ Sao Paulo, Luiz de Queiroz Coll Agr ESALQ, Dept Genet, USP, Piracicaba - Brazil
[3] Rhein Westfal TH Aachen, Fac Med Inst Computat Genom, Aachen Germany, Aachen - Germany
[4] Agron Inst Campinas IAC, Adv Ctr Sugarcane Agrobusiness Technol Res, Ribeirao Preto - Brazil
[5] Univ Fed Sao Carlos UFSCar, Ctr Ciencias Agr, Dept Biotecnol & Prod Vegetal & Anim, Sao Carlos - Brazil
[6] Univ Fed Sao Paulo Unifesp, Inst Ciencia & Tecnol ICT, Sao Jose Dos Campos - Brazil
[7] Fed Univ Lavras UFLA, Dept Biol, Lavras - Brazil
[8] Univ Estadual Campinas, Dept Plant Biol, Inst Biol, UNICAMP, Campinas - Brazil
Total Affiliations: 8
Document type: Journal article
Source: FRONTIERS IN PLANT SCIENCE; v. 12, JUL 7 2021.
Web of Science Citations: 0
Abstract

The protein kinase (PK) superfamily is one of the largest superfamilies in plants and the core regulator of cellular signaling. Despite this substantial importance, the kinomes of sugarcane and sorghum have not been profiled. Here, we identified and profiled the complete kinomes of the polyploid Saccharum spontaneum (Ssp) and Sorghum bicolor (Sbi), a close diploid relative. The Sbi kinome was composed of 1,210 PKs; for Ssp, we identified 2,919 PKs when disregarding duplications and allelic copies, and these were related to 1,345 representative gene models. The Ssp and Sbi PKs were grouped into 20 groups and 120 subfamilies and exhibited high compositional similarities and evolutionary divergences. By utilizing the collinearity between the species, this study offers insights into Sbi and Ssp speciation, PK differentiation and selection. We assessed the PK subfamily expression profiles via RNA-Seq and identified significant similarities between Sbi and Ssp. Moreover, coexpression networks allowed inference of a core structure of kinase interactions with specific key elements. This study provides the first categorization of the allelic specificity of a kinome and offers a wide reservoir of molecular and genetic information, thereby enhancing the understanding of Sbi and Ssp PK evolutionary history. (AU)

FAPESP's process: 14/11482-9 - Evaluation of genomic synteny between sorghum (Sorghum bicolor) and sugarcane (Saccharum officinarum): comparision of genes involved in a QTL for Brix in sorghum to syntenic region in sugarcane
Grantee:Melina Cristina Mancini
Support type: Scholarships in Brazil - Post-Doctorate
FAPESP's process: 18/18588-8 - Association mapping in sugarcane targeting tolerance to yellow leaf virus
Grantee:Ricardo José Gonzaga Pimenta
Support type: Scholarships in Brazil - Master
FAPESP's process: 19/03232-6 - Genome wide selection in sugarcane using machine learning and complex networks for economically important traits
Grantee:Alexandre Hild Aono
Support type: Scholarships in Brazil - Doctorate (Direct)
FAPESP's process: 15/22993-7 - Transcriptomics for the identification of commercially important genes in sugarcane
Grantee:Gabriel Rodrigues Alves Margarido
Support type: Program for Research on Bioenergy (BIOEN) - Young Investigators Grants
FAPESP's process: 15/16399-5 - Balance between dosage and allelic expression to map the global gene expression profile in sugarcane
Grantee:Cláudio Benício Cardoso da Silva
Support type: Scholarships in Brazil - Post-Doctorate
FAPESP's process: 08/52197-4 - Genomic-assisted breeding of sugarcane: using molecular markers for understanding the genetic architecture of quantitative traits and to implement marker assisted selection
Grantee:Anete Pereira de Souza
Support type: Program for Research on Bioenergy (BIOEN) - Thematic Grants
FAPESP's process: 19/21682-9 - Associative mapping and transcriptomic in the investigation of sugarcane yellow leaf virus resistance
Grantee:Ricardo José Gonzaga Pimenta
Support type: Scholarships in Brazil - Doctorate (Direct)
FAPESP's process: 05/55258-6 - Genetic mapping and identification of genetic and functional molecular markers associated with agronomic characteristics of interest in sugarcane
Grantee:Luciana Rossini Pinto Machado da Silva
Support type: Research Grants - Young Investigators Grants
FAPESP's process: 19/19340-2 - The rubber tree kinome: functional classification and expression patterns in cold stress response
Grantee:Lucas Borges dos Santos
Support type: Scholarships in Brazil - Scientific Initiation