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Modeling of the spatiotemporal dispersion of emergent arboviruses using heterogeneous data sources in the State of São Paulo

Grant number: 19/12000-1
Support type:Scholarships in Brazil - Post-Doctorate
Effective date (Start): July 01, 2019
Status:Discontinued
Field of knowledge:Health Sciences - Medicine - Medical Clinics
Cooperation agreement: MRC, UKRI ; Newton Fund, with FAPESP as a partner institution in Brazil
Principal researcher:Ester Cerdeira Sabino
Grantee:Jaqueline Goes de Jesus
Home Institution: Faculdade de Medicina (FM). Universidade de São Paulo (USP). São Paulo , SP, Brazil
Associated research grant:18/14389-0 - Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE), AP.TEM
Associated scholarship(s):20/13395-7 - Genomic epidemiology of emerging arbovirus using heterogeneous data sources in the state of São Paulo, BE.EP.PD

Abstract

The present work intends to analyze transmission patterns of emerging sylvatic arbovirus diseases (Yellow Fever, YFV, West Nile Virus, WNV, Saint Louis Encephalities, SLEV, among others), simultaneously analysing different available sources of information such as genome sequences, human density and movements and vector/vertebrate hosts natural history. The aim is to conciliate genetic information, cartographic and mathematical epidemiology, and natural history of vector and vertebrate hosts in order to produce an analytical framework that simultaneously analyses different data sources with pathogen genomes in order to recostruct transmission events through time and space, clarifying the occurrence and distribution of these viruses.

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Scientific publications
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
IANI, FELIPE C. M.; GIOVANETTI, MARTA; FONSECA, VAGNER; SOUZA, WILLIAM M.; ADELINO, TALITA E. R.; XAVIER, JOILSON; JESUS, JAQUELINE G.; PEREIRA, MAIRA A.; SILVA, MARCOS V. F.; COSTA, ALANA V. B.; SILVA, ERNIRIA C.; MENDES, MARCIA C. O.; FILIPPIS, ANA M. B.; ALBUQUERQUE, CARLOS F. C.; ABREU, ANDRE L.; OLIVEIRA, MARLUCE A. A.; ALCANTARA, LUIZ C. J.; FARIA, NUNO R. Epidemiology and evolution of Zika virus in Minas Gerais, Southeast Brazil. INFECTION GENETICS AND EVOLUTION, v. 91, JUL 2021. Web of Science Citations: 0.
FARIA, NUNO R.; MELLAN, THOMAS A.; WHITTAKER, CHARLES; CLARO, INGRA M.; CANDIDO, DARLAN DA S.; MISHRA, SWAPNIL; CRISPIM, MYUKI A. E.; SALES, FLAVIA C.; HAWRYLUK, IWONA; MCCRONE, JOHN T.; HULSWIT, RUBEN J. G.; FRANCO, LUCAS A. M.; RAMUNDO, MARIANA S.; DE JESUS, JAQUELINE G.; ANDRADE, PAMELA S.; COLETTI, THAIS M.; FERREIRA, GIULIA M.; SILVA, CAMILA A. M.; MANULI, ERIKA R.; PEREIRA, RAFAEL H. M.; PEIXOTO, PEDRO S.; KRAEMER, MORITZ U.; GABURO, JR., NELSON; CAMILO, CECILIA DA C.; HOELTGEBAUM, HENRIQUE; SOUZA, WILLIAM M.; ROCHA, ESMENIA C.; DE SOUZA, LEANDRO M.; DE PINHO, MARIANA C.; ARAUJO, LEONARDO J. T.; MALTA, V, FREDERICO S.; DE LIMA, ALINE B.; SILVA, JOICE DO P.; ZAULI, DANIELLE A. G.; FERREIRA, ALESSANDRO C. DE S.; SCHNEKENBERG, RICARDO P.; LAYDON, DANIEL J.; WALKER, PATRICK G. T.; SCHLUETER, HANNAH M.; DOS SANTOS, ANA L. P.; VIDAL, MARIA S.; DEL CARO, VALENTINA S.; FILHO, ROSINALDO M. F.; DOS SANTOS, HELEM M.; AGUIAR, RENATO S.; PROENCA-MODENA, JOSE L. P.; NELSON, BRUCE; HAY, JAMES A.; MONOD, MELODIE; MISCOURIDOU, XENIA; COUPLAND, HELEN; SONABEND, RAPHAEL; VOLLMER, MICHAELA; GANDY, AXEL; PRETE, JR., CARLOS A.; NASCIMENTO, VITOR H.; SUCHARD, MARC A.; BOWDEN, THOMAS A.; POND, SERGEI L. K.; WU, CHIEH-HSI; RATMANN, OLIVER; FERGUSON, NEIL M.; DYE, CHRISTOPHER; LOMAN, NICK J.; LEMEY, PHILIPPE; RAMBAUT, ANDREW; FRAIJI, NELSON A.; CARVALHO, MARIA DO P. S. S.; PYBUS, OLIVER G.; FLAXMAN, SETH; BHATT, SAMIR; SABINO, ESTER C. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science, v. 372, n. 6544, p. 815+, MAY 21 2021. Web of Science Citations: 90.
CANDIDO, DARLAN S.; CLARO, INGRA M.; DE JESUS, JAQUELINE G.; SOUZA, WILLIAM M.; MOREIRA, FILIPE R. R.; DELLICOUR, SIMON; MELLAN, THOMAS A.; DU PLESSIS, LOUIS; PEREIRA, RAFAEL H. M.; SALES, FLAVIA C. S.; MANULI, ERIKA R.; THEZE, JULIEN; ALMEIDA, LUIZ; MENEZES, MARIANE T.; VOLOCH, CAROLINA M.; FUMAGALLI, MARCILIO J.; COLETTI, THAIS M.; SILVA, CAMILA A. M.; RAMUNDO, MARIANA S.; AMORIM, MARIENE R.; HOELTGEBAUM, HENRIQUE H.; MISHRA, SWAPNIL; GILL, MANDEV S.; CARVALHO, LUIZ M.; BUSS, LEWIS F.; PRETE JR, CARLOS A.; ASHWORTH, JORDAN; NAKAYA, I, HELDER; PEIXOTO, PEDRO S.; BRADY, OLIVER J.; NICHOLLS, SAMUEL M.; TANURI, AMILCAR; ROSSI, ATILA D.; BRAGA, V, CARLOS K.; GERBER, ALEXANDRA L.; GUIMARAES, ANA PAULA DE C.; GABURO JR, NELSON; ALENCAR, CECILA SALETE; FERREIRA, ALESSANDRO C. S.; LIMA, CRISTIANO X.; LEVI, JOSE EDUARDO; GRANATO, CELSO; FERREIRA, GIULIA M.; FRANCISCO JR, RONALDO S.; GRANJA, FABIANA; GARCIA, MARCIA T.; MORETTI, MARIA LUIZA; PERROUD JR, MAURICIO W.; CASTINEIRAS, TEREZINHA M. P. P.; LAZARI, CAROLINA S.; HILL, SARAH C.; DE SOUZA SANTOS, ANDREZA ARUSKA; SIMEONI, CAMILA L.; FORATO, JULIA; SPOSITO, ANDREI C.; SCHREIBER, ANGELICA Z.; SANTOS, MAGNUN N. N.; DE SA, CAMILA ZOLINI; SOUZA, RENAN P.; RESENDE-MOREIRA, LUCIANA C.; TEIXEIRA, MAURO M.; HUBNER, JOSY; LEME, PATRICIA A. F.; MOREIRA, RENNAN G.; NOGUEIRA, MAURICIO L.; FERGUSON, NEIL M.; COSTA, SILVIA F.; PROENCA-MODENA, JOSE LUIZ; VASCONCELOS, ANA TEREZA R.; BHATT, SAMIR; LEMEY, PHILIPPE; WU, CHIEH-HSI; RAMBAUT, ANDREW; LOMAN, NICK J.; AGUIAR, RENATO S.; PYBUS, OLIVER G.; SABINO, ESTER C.; FARIA, NUNO RODRIGUES; DISCOVERY, BRAZIL-UK CTR ARBOVIRUS. Evolution and epidemic spread of SARS-CoV-2 in Brazil. Science, v. 369, n. 6508, SI, p. 1255+, SEP 4 2020. Web of Science Citations: 124.

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