Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE)

• Grant number: 18/14389-0
• Support Opportunities: Research Projects - Thematic Grants
• Start date: April 01, 2019
• End date: March 31, 2024
• Field of knowledge: Health Sciences - Medicine - Medical Clinics
• Agreement: MRC, UKRI ; Newton Fund, with FAPESP as a partner institution in Brazil
• Principal Investigator: Ester Cerdeira Sabino
• Grantee: Ester Cerdeira Sabino
• Principal researcher abroad: Nuno Miguel Rodrigues Pascoal Faria
• Institution abroad: University of Oxford, England
• Host Institution: Faculdade de Medicina (FM). Universidade de São Paulo (USP). São Paulo , SP, Brazil
• Pesquisadores principais:( Últimos ): Maria Anice Mureb Sallum
• Pesquisadores principais:( Antigos ): Adriano Pinter dos Santos ; Anna Sara Shafferman Levin ; Renato Pereira de Souza ; Vivian Helena Iida Avelino da Silva
• Associated researchers: Carlos Magno Castelo Branco Fortaleza ; Erika Regina Manuli ; Fernando Rosado Spilki ; Filipe Romero Rebello Moreira ; Franciane Mendes de Oliveira ; Juliana Telles de Deus ; Licia Natal Fernandes ; Lucas Augusto Moyses Franco ; Marcelo Urbano Ferreira ; Mariana Sequetin Cunha ; Marina Farrel Côrtes ; Marissa da Silva Lima ; Maurício Lacerda Nogueira ; Mayara Bertanhe ; Milena Gomes Cabral ; Mirela D'arc Ferreira da Costa ; Nazareno Scaccia ; Silvia Figueiredo Costa
• Associated research grant(s): 22/00533-8 - Evaluation of a field-portable platform for image-based analysis of a (quantitative) loop-mediated isothermal amplification assay, AP.R SPRINT; 20/04884-4 - Prevalence of COVID-19 among blood donors and evaluation of seropositive donors for production of hiperimune serum, AP.R
• Associated scholarship(s): 23/06687-0 - Implementation of the electronic nose technique in prospective samples of saliva and pulmonary exhaled breath from patients with Covid-19, other viral infections, and control patients., BP.IC; 22/11933-7 - Molecular mechanisms involved in the development of post-Chikungunya Chronic Inflammatory Joint Disease, BP.PD; 22/05637-6 - Dengue virus serotypes 1-4 phylogeography in São Paulo state: a retrospective study from 1991 until 2016, BE.PQ; + associated scholarships 21/11953-5 - Spatiotemporal analysis of SARS-CoV-2 variants of concern in the city of São Paulo, BP.PD; 21/11827-0 - Development of a rapid, cost-effective and sensitive metagenomics based test for the diagnosis and surveillance of viruses associated with Encephalitis/Meningitis, BP.PD; 21/13203-3 - Prospective screening for identification of variants of concern of SARS-CoV-2 in the municipality of São Paulo, BP.TT; 21/13204-0 - Survey of infectious agents by metagenomics in bats in green areas in the city of São Paulo and its implications for Public Health, BP.TT; 21/10241-1 - Phylogenetic analysis of SARS-CoV-2 in the city of São Paulo, BP.TT; 21/09969-0 - Genomic surveillance of Sars-CoV-2 strains of concern in the city of São Paulo, BP.TT; 21/09278-8 - Viral diagnosis in a company with acute febrile disease in Brazil, BP.TT; 21/09083-2 - Phylogeography of dengue virus serotypes 1 to 4 in the State of São Paulo: a retrospective study from 1991 to 2016, BP.TT; 21/03973-6 - Aspects of the yellow storm in the Serra da Cantareira, Metropolitan Region of São Paulo - Brazil, BP.TT; 21/03215-4 - Viral metagenomics for virus identification in mosquitoes in the state of São Paulo, BP.TT; 20/04272-9 - Viral genetics for the identification of arboviruses in the State of São Paulo, BP.TT; 20/02280-4 - Viral metagenomics for virus identification in mosquitoes in the State of São Paulo, BP.TT; 19/21706-5 - Viral metagenomics of mosquitoes captured in the State of São Paulo, BP.DD; 19/21301-5 - Flavivirus and Alphavirus identification in mosquitoes (Diptera: Culicidae) collected in the city of São Paulo, BP.IC; 19/21568-1 - Identification of Yellow Fever and Chikungunya in mosquitoes captured in the state of Sao Paulo, BP.IC; 19/12988-7 - Mosquito species identification, blood meal and virus detection using Oxford Nanopore technologies' (MinION) in a YF transmission scenario, BP.PD; 19/12000-1 - Modeling of the spatiotemporal dispersion of emergent arboviruses using heterogeneous data sources in the State of São Paulo, BP.PD; 19/07544-2 - Mosquito field collections and COI barcode identification using MinION technology, BP.TT; 19/07982-0 - Aspects of the yellow storm in the Serra da Cantareira, Metropolitan Region of São Paulo - Brazil, BP.TT; 17/00021-9 - Viral metagenomics to track, explain and predict the transmission and spatiotemporal spread of Dengue and Chikungunya viruses in Brazil, BP.PD - associated scholarships

Abstract

Recently Brazil has been affected by unexpected arbovirus epidemics of Zika, Chikungunya, dengue and Yellow fever viruses. The huge economic burden of Zika (R$ 1 billion) and the widespread presence of mosquito vectors in Brazil highlights the need for accurate predictions of disease spread, particularly in large, densely populated regions. This UK-Brazil Partnership will enhance and expand an excellent existing collaboration, with the aim of anticipating and preventing future arbovirus epidemics in Brazil. Our research questions include: 1) What arboviruses circulate in human, mosquito and reservoir populations in Brazil? 2) Where and how do arboviruses persist during non-epidemic periods? 3) What are the implications of genetic diversity of circulating arboviruses? 4) What factors convert a novel introduction into human populations into an epidemic, and how best to respond? Active surveillance in vectors and reservoirs will be combined with seroprevalence surveys in blood donors to characterize arboviral dynamics, genomics, transmission and immunity. Novel portable genome sequencing protocols and real-time epidemiological analyses will be undertaken for relevant arboviruses. Unifying information from genomics and epidemiology will strengthen the evidence base for public health actions and strength the capacity of Brazilian health system in response to emerging arboviral diseases. (AU)

Scientific publications

(68)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

NICOLETE, VANESSA C.; RODRIGUES, PRISCILA T.; JOHANSEN, IGOR C.; CORDER, RODRIGO M.; TONINI, JULIANA; CARDOSO, MARLY A.; DE JESUS, JAQUELINE G.; CLARO, INGRA M.; FARIA, NUNO R.; SABINO, ESTER C.; et al. Interacting Epidemics in Amazonian Brazil: Prior Dengue Infection Associated With Increased Coronavirus Disease 2019 (COVID-19) Risk in a Population-Based Cohort Stud. Clinical Infectious Diseases, v. 73, n. 11, p. 2045-2054, DEC 1 2021. (18/14389-0, 16/18740-9, 20/04505-3)

VOGELS, CHANTAL B. F.; BREBAN, MALLERY I.; OTT, ISABEL M.; ALPERT, TARA; PETRONE, MARY E.; WATKINS, ANNE E.; KALINICH, CHANEY C.; EARNEST, REBECCA; ROTHMAN, JESSICA E.; DE JESUS, JAQUELINE GOES; et al. Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. PLOS BIOLOGY, v. 19, n. 5, MAY 2021. (18/14389-0)

GUTIERREZ, BERNARDO; WISE, EMMA L.; PULLAN, STEVEN T.; LOGUE, CHRISTOPHER H.; BOWDEN, THOMAS A.; ESCALERA-ZAMUDIO, MARINA; TRUEBA, GABRIEL; NUNES, MARCIO R. T.; FARIA, NUNO R.; PYBUS, OLIVER G.. Evolutionary Dynamics of Oropouche Virus in South America. Journal of Virology, v. 94, n. 5, MAR 2020. (18/14389-0)

DE SOUZA, WILLIAM MARCIEL; FUMAGALLI, MARCILIO JORGE; CARRERA, JEAN PAUL; DE ARAUJO, JANSEN; CARDOSO, JEDSON FERREIRA; DE CARVALHO, CRISTIANO; DURIGON, EDISON LUIZ; QUEIROZ, LUZIA HELENA; FARIA, NUNO RODRIGUES; MURCIA, PABLO R.; et al. Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. INFECTION GENETICS AND EVOLUTION, v. 95, NOV 2021. (15/05778-5, 19/24251-9, 13/14929-1, 18/09383-3, 17/13981-0, 18/14389-0)

SABINO, JANINE S.; AMORIM, MARIENE R.; DE SOUZA, WILLIAM M.; MAREGA, LIA F.; MOFATTO, LUCIANA S.; TOLEDO-TEIXEIRA, DANIEL A.; FORATO, JULIA; STABELI, RODRIGO G.; COSTA, MARIA LAURA; SPILKI, FERNANDO R.; et al. Clearance of Persistent SARS-CoV-2 RNA Detection in a NF kappa B-Deficient Patient in Association with the Ingestion of Human Breast Milk: A Case Report. Viruses-Basel, v. 14, n. 5, p. 10-pg., 2022-05-01. (20/04558-0, 18/14389-0, 16/00194-8, 18/14372-0)

NASTRI, ANA CATHARINA; DUARTE-NETO, AMARO NUNES; CASADIO, LUCIANA VILAS BOAS; SOUZA, WILLIAM MARCIEL DE; CLARO, INGRA M.; MANULI, ERIKA R.; SELEGATTO, GLORIA; SALOMA, MATIAS C.; FIALKOVITZ, GABRIEL; TABORDA, MARIANE; et al. Understanding Sabia virus infections (Brazilian mammarenavirus). TRAVEL MEDICINE AND INFECTIOUS DISEASE, v. 48, p. 9-pg., 2022-07-01. (18/14389-0, 18/09383-3)

BUSS, LEWIS; PRETE, CARLOS A.; WHITTAKER, CHARLES; SALOMON, TASSILA; OIKAWA, MARCIO K.; PEREIRA, RAFAEL H. M.; MOURA, ISABEL C. G.; DELERINO, LUCAS; FRANCA, RAFAEL F. O.; MIYAJIMA, FABIO; et al. Predicting SARS-CoV-2 Variant Spread in a Completely Seropositive Population Using Semi-Quantitative Antibody Measurements in Blood Donors. VACCINES, v. 10, n. 9, p. 11-pg., 2022-09-01. (18/14389-0, 19/21858-0)

KRAEMER, MORITZ U. G.; HILL, VERITY; RUIS, CHRISTOPHER; DELLICOUR, SIMON; BAJAJ, SUMALI; MCCRONE, JOHN T.; BAELE, GUY; PARAG, KRIS V.; BATTLE, ANYA LINDSTROM; GUTIERREZ, BERNARDO; et al. Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science, v. 373, n. 6557, p. 889+, AUG 20 2021. (18/14389-0)

JAQUELINE GOES DE JESUS; CLAUDIO SACCHI; DARLAN DA SILVA CANDIDO; INGRA MORALES CLARO; FLÁVIA CRISTINA SILVA SALES; ERIKA REGINA MANULI; DANIELA BERNARDES BORGES DA SILVA; TEREZINHA MARIA DE PAIVA; MARGARETE APARECIDA BENEGA PINHO; KATIA CORREA DE OLIVEIRA SANTOS; et al. Importation and early local transmission of COVID-19 in Brazil, 2020. Revista do Instituto de Medicina Tropical de São Paulo, v. 62, 2020-05-11. (18/14389-0)

JAQUELINE GOES DE JESUS; KARINA ROCHA DUTRA; FLAVIA CRISTINA DA SILVA SALES; INGRA MORALES CLARO; ANA CAROLINA TERZIAN; DARLAN DA SILVA CANDIDO; SARAH C HILL; JULIEN THÉZÉ; CELESTE TORRES; TATIANA LANG DAGOSTINI; et al. Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019. Memórias do Instituto Oswaldo Cruz, v. 115, 2020-05-15. (18/14389-0, 13/21719-3, 15/14313-6, 16/01735-2, 15/12295-0)

FRANCO, DANILO; GONZALEZ, CLAUDIA; ABREGO, LEYDA E.; CARRERA, JEAN-PAUL; DIAZ, YAMILKA; CAICEDO, YASET; MORENO, AMBAR; CHAVARRIA, ORIS; GONDOLA, JESSICA; CASTILLO, MARLENE; et al. Early Transmission Dynamics, Spread, and Genomic Characterization of SARS-CoV-2 in Panama. Emerging Infectious Diseases, v. 27, n. 2, p. 612-615, FEB 2021. (18/14389-0)

ROMANO, CAMILA MALTA; FELIX, ALVINA CLARA; DE PAULA, ANDERSON VICENTE; DE JESUS, JAQUELINE GOES; ANDRADE, PAMELA S.; CANDIDO, DARLAN; DE OLIVEIRA, FRANCIANE M.; RIBEIRO, ANDREIA C.; DA SILVA, FRANCINI C.; INEMAMI, MARTA; et al. SARS-CoV-2 reinfection caused by the P.1 lineage in Araraquara city, Sao Paulo State, Brazil. Revista do Instituto de Medicina Tropical de São Paulo, v. 63, 2021. (17/13981-0, 19/03859-9, 19/24251-9, 18/14389-0)

CANDIDO, DARLAN S.; CLARO, INGRA M.; DE JESUS, JAQUELINE G.; SOUZA, WILLIAM M.; MOREIRA, FILIPE R. R.; DELLICOUR, SIMON; MELLAN, THOMAS A.; DU PLESSIS, LOUIS; PEREIRA, RAFAEL H. M.; SALES, FLAVIA C. S.; et al. Evolution and epidemic spread of SARS-CoV-2 in Brazil. Science, v. 369, n. 6508, SI, p. 1255+, SEP 4 2020. (20/04558-0, 16/00194-8, 19/21301-5, 18/14389-0, 18/14933-2, 17/13981-0, 20/04836-0, 18/25468-9, 16/18445-7, 18/09383-3, 18/17176-8, 19/12000-1, 19/07544-2, 19/24251-9)

DE SOUZA, WILLIAM M.; MURARO, STEFANIE P.; SOUZA, GABRIELA F.; AMORIM, MARIENE R.; SESTI-COSTA, RENATA; MOFATTO, LUCIANA S.; FORATO, JULIA; BARBOSA, PRISCILLA P.; TOLEDO-TEIXEIRA, DANIEL A.; BISPO-DOS-SANTOS, KARINA; et al. lusters of SARS-CoV-2 Lineage B.1.1.7 Infection after Vaccination with Adenovirus-Vectored and Inactivated Vaccine. Viruses-Basel, v. 13, n. 11, NOV 2021. (16/00194-8, 18/14389-0, 18/13645-3, 17/26908-0, 20/02159-0, 17/13981-0, 19/09704-7, 18/10224-7, 19/24251-9, 20/04558-0)

THAÍS DE MOURA COLETTI; CAMILA MALTA ROMANO; PAULO ROBERTO URBINATTI; RENILDO SOUZA TEIXEIRA; LEILA WEISS DE ALMEIDA PEDROSA; MARCELLO SCHIAVO NARDI; DELSIO NATAL; ANTÔNIO CHARLYS DA COSTA; JAQUELINE GOES DE JESUS; INGRA MORALES CLARO; et al. Characterization of insect-specific Culex flavivirus (Flaviviridae) nucleotide sequences in mosquitoes from urban parks in São Paulo, Brazil. Revista da Sociedade Brasileira de Medicina Tropical, v. 55, 2022-09-26. (17/00021-9, 18/17176-8, 19/03859-9, 18/14389-0, 16/18204-0, 19/12000-1, 10/51230-8)

FRANCO FILHO, LUCIANO CHAVES; BARATA, RAFAEL RIBEIRO; COELHO, MONICA SILVA; CARDOSO, JEDSON FERREIRA; LEMOS, POLIANA DA SILVA; DOS REIS, HERALD SOUZA; RIBEIRO FAVACHO, JOANA DA FELICIDADE; FARIA, NUNO RODRIGUES; TEIXEIRA NUNES, MARCIO ROBERTO. Genome sequencing of dengue virus serotype 4 in a bat brain sample (Platyrrhinus helleri) from the Brazilian Amazon. INFECTION GENETICS AND EVOLUTION, v. 109, p. 5-pg., 2023-02-10. (18/14389-0)

RODRIGUES DE SA, IVY LUIZI; HUTCHINGS, ROSA SA GOMES; HUTCHINGS, ROGER WILLIAM; MUREB SALLUM, MARIA ANICE. Revision of the Educator Group of Culex (Melanoconion) (Diptera, Culicidae). Journal of Medical Entomology, v. 59, n. 4, p. 39-pg., 2022-06-01. (16/25604-4, 14/26229-7, 18/14389-0, 15/05109-6)

DE SOUZA, WILLIAM MARCIEL; BUSS, LEWIS FLETCHER; CANDIDO, DARLAN DA SILVA; CARRERA, JEAN-PAUL; LI, SABRINA; ZAREBSKI, ALEXANDER E.; PEREIRA, RAFAEL HENRIQUE MORAES; PRETE, JR., CARLOS A.; DE SOUZA-SANTOS, ANDREZA ARUSKA; PARAG, KRIS V.; et al. Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil. NATURE HUMAN BEHAVIOUR, v. 4, n. 8, JUL 2020. (17/13981-0, 19/24251-9, 18/12579-7, 18/14389-0)

DENG, XIANDING; GU, WEI; FEDERMAN, SCOT; DU PLESSIS, LOUIS; PYBUS, OLIVER G.; FARIA, NUNO R.; WANG, CANDACE; YU, GUIXIA; BUSHNELL, BRIAN; PAN, CHAO-YANG; et al. Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science, v. 369, n. 6503, p. 582+, JUL 31 2020. (18/14389-0)

PINTER, ADRIANO; PRIST, PAULA RIBEIRO; MARRELLI, MAURO TOLEDO. Biodiversity and public health interface. Biota Neotropica, v. 22, p. 10-pg., 2022-01-01. (20/06694-8, 18/14389-0, 18/25437-6, 19/20590-3)

BUSS, LEWIS F.; PRETE JR, CARLOS A.; ABRAHIM, CLAUDIA M. M.; MENDRONE JR, ALFREDO; SALOMON, TASSILA; DE ALMEIDA-NETO, CESAR; FRANCA, RAFAEL F. O.; BELOTTI, MARIA C.; CARVALHO, MARIA P. S. S.; COSTA, ALLYSON G.; et al. Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic. Science, v. 371, n. 6526, p. 288+, JAN 15 2021. (18/14389-0)

ALEXANDER, NEAL; CARABALI, MABEL; LIM, JACQUELINE K.. Estimating force of infection from serologic surveys with imperfect tests. PLoS One, v. 16, n. 3, MAR 4 2021. (18/14389-0)

DE SOUZA SANTOS, ANDREZA ARUSKA; CANDIDO, DARLAN DA SILVA; DE SOUZA, WILLIAM MARCIEL; BUSS, LEWIS; LI, SABRINA L.; PEREIRA, RAFAEL H. M.; WU, CHIEH-HSI; SABINO, ESTER C.; FARIA, NUNO R.. Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities. SCIENTIFIC DATA, v. 8, n. 1, MAR 4 2021. (17/13981-0, 19/24251-9, 18/14389-0)

DU PLESSIS, LOUIS; MCCRONE, JOHN T.; ZAREBSKI, ALEXANDER E.; HILL, VERITY; RUIS, CHRISTOPHER; GUTIERREZ, BERNARDO; RAGHWANI, JAYNA; ASHWORTH, JORDAN; COLQUHOUN, RACHEL; CONNOR, THOMAS R.; et al. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science, v. 371, n. 6530, p. 708+, FEB 12 2021. (18/14389-0)

WHITTAKER, CHARLES; WATSON, OLIVER J.; ALVAREZ-MORENO, CARLOS; ANGKASEKWINAI, NASIKARN; BOONYASIRI, ADHIRATHA; CARLOS TRIANA, LUIS; CHANDA, DUNCAN; CHAROENPONG, LANTHARITA; CHAYAKULKEEREE, METHEE; COOKE, GRAHAM S.; et al. Understanding the Potential Impact of Different Drug Properties on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission and Disease Burden: A Modelling Analysis. Clinical Infectious Diseases, v. N/A, p. 10-pg., 2021-09-21. (18/14389-0)

GIMMA, AMY; MUNDAY, JAMES; WONG, KERRY L. M.; COLETTI, PIETRO; VAN ZANDVOORT, KEVIN; PREM, KIESHA; KLEPAC, PETRA; RUBIN, G. JAMES; FUNK, SEBASTIAN; EDMUNDS, W. JOHN; et al. Changes in social contacts in England during the COVID-19 pandemic between March 2020 and March 2021 as measured by the CoMix survey: A repeated cross-sectional study. PLOS MEDICINE, v. 19, n. 3, p. 25-pg., 2022-03-01. (18/14389-0)

RIBEIRO PRIST, PAULA; REVERBERI TAMBOSI, LEANDRO; FILIPE MUCCI, LUIS; PINTER, ADRIANO; PEREIRA DE SOUZA, RENATO; DE LARA MUYLAERT, RENATA; ROGER RHODES, JONATHAN; HENRIQUE COMIN, CESAR; DA FONTOURA COSTA, LUCIANDO; LANG D'AGOSTINI, TATIANA; et al. Roads and forest edges facilitate yellow fever virus dispersion. JOURNAL OF APPLIED ECOLOGY, v. 59, n. 1, OCT 2021. (18/09125-4, 18/14389-0, 15/22308-2, 18/23364-1, 17/11666-0)

PRETE, CARLOS A., JR.; BUSS, LEWIS F.; WHITTAKER, CHARLES; SALOMON, TASSILA; OIKAWA, MARCIO K.; PEREIRA, RAFAEL H. M.; MOURA, ISABEL C. G.; DELERINO, LUCAS; BARRAL-NETTO, MANOEL; TAVARES, NATALIA M.; et al. SARS-CoV-2 antibody dynamics in blood donors and COVID-19 epidemiology in eight Brazilian state capitals: A serial cross-sectional study. eLIFE, v. 11, p. 53-pg., 2022-09-22. (18/14389-0, 19/21858-0)

DE MENEZES, MARIANE TALON; MOREIRA, FILIPE ROMERO REBELLO; WHITTAKER, CHARLES; SANTOS, FRANCIELE MARTINS; QUEIROZ, DANIEL COSTA; GEDDES, VICTOR; FONSECA, PAULA LUIZE CAMARGOS; DE JESUS, JAQUELINE GOES; MENDES-OLIVEIRA, FRANCIANE; REIS-SOUZA, VALQUIRIA; et al. Dynamics of Early Establishment of SARS-CoV-2 VOC Omicron Lineages in Minas Gerais, Brazil. Viruses-Basel, v. 15, n. 2, p. 13-pg., 2023-02-01. (18/14389-0)

MOREIRA, FILIPE R. R.; BONFIM, DIEGO M.; ZAULI, DANIELLE A. G.; SILVA, JOICE P.; LIMA, ALINE B.; MALTA, FREDERICO S. V.; FERREIRA, ALESSANDRO C. S.; PARDINI, VICTOR C.; MAGALHAES, WAGNER C. S.; QUEIROZ, DANIEL C.; et al. Epidemic Spread of SARS-CoV-2 Lineage B.1.1.7 in Brazil. Viruses-Basel, v. 13, n. 6, p. 4-pg., 2021-06-01. (18/14389-0)

TEGALLY, HOURIIYAH; WILKINSON, EDUAN; TSUI, JOSEPH L. -H.; MOIR, MONIKA; MARTIN, DARREN; BRITO, ANDERSON FERNANDES; GIOVANETTI, MARTA; KHAN, KAMRAN; HUBER, CARMEN; BOGOCH, ISAAC I.; et al. Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern. Cell, v. 186, n. 15, p. 31-pg., 2023-07-20. (18/14389-0)

HODGSON, DAVID; FLASCHE, STEFAN; JIT, MARK; KUCHARSKI, ADAM J.; GRP, CMMID COVID-19 WORKING. The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant. EUROSURVEILLANCE, v. 26, n. 20, MAY 20 2021. (18/14389-0)

EVELYN PATRICIA SÁNCHEZ ESPINOZA; MARINA FARREL CORTES; SAIDY VASCONEZ NOGUERA; ANDERSON VICENTE DE PAULA; THAIS GUIMARÃES; LUCY SANTOS VILLAS BOAS; MARCELO PARK; CRISTINA CARVALHO DA SILVA; INGRA MORALES; LAURO VIEIRA PERDIGÃO NETO; et al. Are mobile phones part of the chain of transmission of SARS-CoV-2 in hospital settings?. Revista do Instituto de Medicina Tropical de São Paulo, v. 63, 2021-09-27. (18/14389-0)

AMORIM, MARIENE R.; SOUZA, WILLIAM M.; BARROS, JR., ANTONIO C. G.; TOLEDO-TEIXEIRA, DANIEL A.; BISPO-DOS-SANTOS, KARINA; SIMEONI, CAMILA L.; PARISE, PIERINA L.; VIEIRA, ALINE; FORATO, JULIA; CLARO, INGRA M.; et al. Respiratory Viral Shedding in Healthcare Workers Reinfected with SARS-CoV-2, Brazil, 2020. Emerging Infectious Diseases, v. 27, n. 6, p. 1737-1740, JUN 2021. (20/04558-0, 16/00194-8, 20/02448-2, 18/14389-0, 17/13981-0, 17/26908-0, 19/24251-9, 20/02159-0)

MEE, PAUL; ALEXANDER, NEAL; MAYAUD, PHILIPPE; GONZALEZ, FELIPE DE JESUS COLON; ABBOTT, SAM; SANTOS, ANDREZA ARUSKA DE SOUZA; ACOSTA, ANDRE LUIS; PARAG, KRIS, V; PEREIRA, RAFAEL H. M.; PRETE JR, CARLOS A.; et al. Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis. LANCET REGIONAL HEALTH-AMERICAS, v. 5, p. 14-pg., 2022-01-21. (18/14389-0)

LEAL, FABIO E.; MENDES-CORREA, MARIA C.; BUSS, LEWIS FLETCHER; COSTA, SILVIA F.; BIZARIO, JOAO C. S.; DE SOUZA, SONIA R. P.; THOMAZ, OSORIO; TOZETTO-MENDOZA, TANIA REGINA; VILLAS-BOAS, LUCY S.; DE OLIVEIRA-DA SILVA, LEA CAMPOS; et al. Clinical features and natural history of the first 2073 suspected COVID-19 cases in the Corona Sao Caetano primary care programme: a prospective cohort study. BMJ OPEN, v. 11, n. 1, 2021. (18/14389-0)

DA SILVA, HERCULANO; OLIVEIRA, TATIANE M. P.; SALLUM, MARIA ANICE M.. Bacterial Community Diversity and Bacterial Interaction Network in Eight Mosquito Species. GENES, v. 13, n. 11, p. 14-pg., 2022-11-01. (18/14389-0)

HODGSON, DAVID; FLASCHE, STEFAN; JIT, MARK; KUCHARSKI, ADAM J.; CMMID COVID-19 WORKING GRP. The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant. EUROSURVEILLANCE, v. 26, n. 20, p. 7-pg., 2021-05-20. (18/14389-0)

MCCRONE, JOHN T.; HILL, VERITY; BAJAJ, SUMALI; PENA, ROSARIO EVANS; LAMBERT, BEN C.; INWARD, RHYS; BHATT, SAMIR; VOLZ, ERIK; RUIS, CHRISTOPHER; DELLICOUR, SIMON; et al. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature, v. 610, n. 7930, p. 26-pg., 2022-08-11. (18/14389-0)

ANDRADE, PAMELA S.; VALENCA, IAN N.; HEINISCH, MARTA R. S.; ROCHA, ESMENIA C.; FERNANDES, LICIA N.; FARIA, NUNO R.; SABINO, ESTER C.; LIMA-CAMARA, TAMARA N.. First Report of Wenzhou sobemo-like virus 4 in Aedes albopictus (Diptera: Culicidae) in Latin America. Viruses-Basel, v. 14, n. 11, p. 8-pg., 2022-11-01. (18/14389-0)

LI, SABRINA L.; PEREIRA, RAFAEL H. M.; PRETE JR, CARLOS A.; ZAREBSKI, ALEXANDER E.; EMANUEL, LUCAS; ALVES, PEDRO J. H.; PEIXOTO, PEDRO S.; BRAGA, CARLOS K., V; DE SOUZA SANTOS, ANDREZA ARUSKA; DE SOUZA, WILLIAM M.; et al. Higher risk of death from COVID-19 in low-income and non-White populations of SAo Paulo, Brazil. BMJ GLOBAL HEALTH, v. 6, n. 4, p. 11-pg., 2021-04-01. (19/21858-0, 19/24251-9, 18/14389-0, 17/13981-0)

REZENDE, HELDER RICAS; ROMANO, CAMILA MALTA; CLARO, INGRA MORALES; CALEIRO, GIOVANA SANTOS; SABINO, ESTER CERDEIRA; FELIX, ALVINA CLARA; BISSOLI, JEFFERSON; HILL, SARAH; FARIA, NUNO RODRIGUES; CARDOSO DA SILVA, THERESA CRISTINA; et al. First report of Aedes albopictus infected by Dengue and Zika virus in a rural outbreak in Brazil. PLoS One, v. 15, n. 3, MAR 12 2020. (15/05958-3, 18/14389-0)

INWARD, RHYS P. D.; PARAG, KRIS, V; FARIA, NUNO R.. Using multiple sampling strategies to estimate SARS-CoV-2 epidemiological parameters from genomic sequencing data. NATURE COMMUNICATIONS, v. 13, n. 1, p. 14-pg., 2022-09-23. (18/14389-0)

BRITO, ANDERSON F.; SEMENOVA, ELIZAVETA; DUDAS, GYTIS; HASSLER, GABRIEL W.; KALINICH, CHANEY C.; KRAEMER, MORITZ U. G.; HO, JOSES; TEGALLY, HOURIIYAH; GITHINJI, GEORGE; AGOTI, CHARLES N.; et al. Global disparities in SARS-CoV-2 genomic surveillance. NATURE COMMUNICATIONS, v. 13, n. 1, p. 13-pg., 2022-11-16. (18/14389-0)

LAZARI, CAROLINA DOS SANTOS; RAMUNDO, MARIANA SEVERO; TEN-CATEN, FELIPE; BRESSAN, CLARISSE S.; DE FILIPPIS, ANA MARIA BISPO; MANULI, ERIKA REGINA; DE MORAES, ISABELLA; PEREIRA, GEOVANA MARIA; CORTES, MARINA FARREL; CANDIDO, DARLAN DA SILVA; et al. Clinical markers of post-Chikungunya chronic inflammatory joint disease: A Brazilian cohort. PLoS Neglected Tropical Diseases, v. 17, n. 1, p. 17-pg., 2023-01-01. (18/14389-0, 16/20597-0, 18/09971-2)

POLICARPO, J. M. P.; RAMOS, A. A. G. F.; DYE, C.; FARIA, N. R.; LEAL, F. E.; MORAES, O. J. S.; PARAG, K. V.; PEIXOTO, P. S.; BUSS, L.; SABINO, E. C.; et al. Scale-free dynamics of COVID-19 in a Brazilian city. Applied Mathematical Modelling, v. 121, p. 19-pg., 2023-05-03. (18/14389-0, 16/17612-7, 16/18445-7)

HILL, SARAH C.; DE SOUZA, RENATO; THEZE, JULIEN; CLARO, INGRA; AGUIAR, RENATO S.; ABADE, LEANDRO; SANTOS, FABIANA C. P.; CUNHA, MARIANA S.; NOGUEIRA, JULIANA S.; SALLES, FLAVIA C. S.; et al. Genomic Surveillance of Yellow Fever Virus Epizootic in Sao Paulo, Brazil, 2016-2018. PLOS PATHOGENS, v. 16, n. 8, AUG 2020. (18/14389-0, 16/01735-2)

MARIA CASSIA MENDES-CORREA; FÁBIO DE ROSE GHILARDI; MATIAS CHIARASTELLI SALOMÃO; LUCY SANTOS VILLAS-BOAS; ANDERSON VICENTE DE PAULA; HEUDER GUSTAVO OLIVEIRA PAIAO; ANTONIO CHARLYS DA COSTA; TÂNIA REGINA TOZETTO-MENDOZA; WILTON FREIRE; FLAVIA CRISTINA SILVA SALES; et al. SARS-CoV-2 shedding, infectivity, and evolution in an immunocompromised adult patient. Revista do Instituto de Medicina Tropical de São Paulo, v. 66, 2024-05-13. (18/14389-0, 20/05623-0)

PRETE, CARLOS A., JR.; BUSS, LEWIS; DIGHE, AMY; PORTO, VICTOR BERTOLLO; DA SILVA CANDIDO, DARLAN; GHILARDI, FABIO; PYBUS, OLIVER G.; DE OLIVEIRA, WANDERSON K.; CRODA, JULIO H. R.; SABINO, ESTER C.; et al. Serial interval distribution of SARS-CoV-2 infection in Brazil. JOURNAL OF TRAVEL MEDICINE, v. 28, n. 2, p. 3-pg., 2021-03-01. (18/14389-0, 18/12579-7)

WHITTAKER, CHARLES; RATMANN, OLIVER; DYE, CHRISTOPHER; SABINO, ESTER C.; FARIA, NUNO R.. Altered demographic profile of hospitalizations during the second COVID-19 wave in Amazonas, Brazil. LANCET REGIONAL HEALTH-AMERICAS, v. 2, p. 2-pg., 2021-10-01. (18/14389-0)

LI, SABRINA L.; ACOSTA, ANDRE L.; HILL, SARAH C.; BRADY, OLIVER J.; DE ALMEIDA, MARCO A. B.; CARDOSO, JADER DA C.; HAMLET, ARRAN; MUCCI, LUIS F.; DE DEUS, JULIANA TELLES; IANI, FELIPE C. M.; et al. apping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazi. PLoS Neglected Tropical Diseases, v. 16, n. 1, JAN 2022. (18/14389-0, 19/12988-7)

PRETE, JR., CARLOS A.; BUSS, LEWIS F.; BUCCHERI, RENATA; ABRAHIM, CLAUDIA M. M.; SALOMON, TASSILA; CRISPIM, MYUKI A. E.; OIKAWA, MARCIO K.; GREBE, EDUARD; DA COSTA, ALLYSON G.; FRAIJI, NELSON A.; et al. einfection by the SARS-CoV-2 Gamma variant in blood donors in Manaus, Brazi. BMC INFECTIOUS DISEASES, v. 22, n. 1, FEB 5 2022. (19/21858-0, 18/14389-0)

GUTIERREZ, BERNARDO; MARQUEZ, SULLY; PRADO-VIVAR, BELEN; BECERRA-WONG, MONICA; JOSE GUADALUPE, JUAN; DA SILVA CANDIDO, DARLAN; CARLOS FERNANDEZ-CADENA, JUAN; MOREY-LEON, GABRIEL; ARMAS-GONZALEZ, RUBEN; MADELEINY ANDRADE-MOLINA, DERLY; et al. enomic epidemiology of SARS-CoV-2 transmission lineages in Ecuado. VIRUS EVOLUTION, v. 7, n. 2, DEC 2021. (18/14389-0)

MEAKIN, SOPHIE; ABBOTT, SAM; BOSSE, NIKOS; MUNDAY, JAMES; GRUSON, HUGO; HELLEWELL, JOEL; SHERRATT, KATHERINE; FUNK, SEBASTIAN; GRP, CMMID COVID-19 WORKING. omparative assessment of methods for short-term forecasts of COVID-19 hospital admissions in England at the local leve. BMC MEDICINE, v. 20, n. 1, FEB 21 2022. (18/14389-0)

NICOLETE, VANESSA C.; RODRIGUES, PRISCILA T.; JOHANSEN, IGOR C.; CORDER, RODRIGO M.; TONINI, JULIANA; CARDOSO, MARLY A.; DE JESUS, JAQUELINE G.; CLARO, INGRA M.; FARIA, NUNO R.; SABINO, ESTER C.; et al. nteracting Epidemics in Amazonian Brazil: Prior Dengue Infection Associated With Increased Coronavirus Disease 2019 (COVID-19) Risk in a Population-Based Cohort Stud. Clinical Infectious Diseases, v. 73, n. 11, p. 2045-2054, DEC 6 2021. (16/18740-9, 18/14389-0, 20/04505-3)

CUNHA, MARIANA SEQUETIN; FARIA, NUNO RODRIGUES; CALEIRO, GIOVANA SANTOS; CANDIDO, DARLAN SILVA; HILL, SARAH C.; CLARO, INGRA MORALES; DA COSTA, ANTONIO CHARLYS; NOGUEIRA, JULIANA SILVA; MAEDA, ADRIANA YURIKA; DA SILVA, FERNANDA GISELE; et al. Genomic evidence of yellow fever virus in Aedes scapularis, southeastern Brazil, 2016. Acta Tropica, v. 205, MAY 2020. (17/00021-9, 18/14389-0, 16/01735-2)

ESPINOZA, EVELYN PATRICIA SANCHEZ; CORTES, MARINA FARREL; NOGUERA, SAIDY VASCONEZ; DE PAULA, ANDERSON VICENTE; GUIMARAES, THAIS; BOAS, LUCY SANTOS VILLAS; PARK, MARCELO; DA SILVA, CRISTINA CARVALHO; MORALES, INGRA; NETO, LAURO VIEIRA PERDIGAO; et al. re mobile phones part of the chain of transmission of SARS- CoV-2 in hospital settings. Revista do Instituto de Medicina Tropical de São Paulo, v. 63, 2021. (18/14389-0)

VERNAL, SEBASTIAN; NAHAS, ANDRESSA K.; NETO, FRANCISCO CHIARAVALLOTI; PRETE JUNIOR, CARLOS A.; CORTEZ, ANDRE L.; SABINO, ESTER CERDEIRA; LUNA, EXPEDITO JOSE DE ALBUQUERQUE. Geoclimatic, demographic and socioeconomic characteristics related to dengue outbreaks in Southeastern Brazil: an annual spatial and spatiotemporal risk model over a 12-year period. Revista do Instituto de Medicina Tropical de São Paulo, v. 63, 2021. (18/14389-0, 19/21858-0)

LEONARDO JOSÉ TADEU DE ARAÚJO; LORENZO LANG GONZALEZ; LEWIS FLETCHER BUSS; JULIANA MARIOTTI GUERRA; DAVID SALAS GOMEZ; CAMILA SANTOS DA SILVA FERREIRA; CINTHYA SANTOS CIRQUEIRA; FÁBIO GHILLARDI; STEVEN S. WITKIN; ESTER CERDEIRA SABINO. Surveillance of hemorrhagic fever and/or neuroinvasive disease: challenges of diagnosis. Revista de Saúde Pública, v. 55, 2021-06-23. (18/14389-0)

CLARO, INGRA MORALES; DA SILVA SALES, FLAVIA CRISTINA; RAMUNDO, MARIANA SEVERO; CANDIDO, DARLAN S.; SILVA, CAMILA A. M.; DE JESUS, JAQUELINE GOES; MANULI, ERIKA R.; DE OLIVEIRA, CRISTINA MENDES; SCARPELLI, LUCIANO; CAMPANA, GUSTAVO; et al. Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020. Emerging Infectious Diseases, v. 27, n. 3, p. 970-972, MAR 2021. (18/14389-0)

DA SILVA, HERCULANO; OLIVEIRA, TATIANE M. P.; SABINO, ESTER C.; ALONSO, DIEGO PERES; SALLUM, MARIA ANICE M.. Bacterial diversity in Haemagogus leucocelaenus (Diptera: Culicidae) from Vale do Ribeira, Sao Paulo, Brazil. BMC Microbiology, v. 22, n. 1, p. 10-pg., 2022-06-22. (18/14389-0)

JAFARI, YALDA; YIN, MO; LIM, CHERRY; POPLE, DIANE; EVANS, STEPHANIE; STIMSON, JAMES; PHAM, THI MUI; READ, JONATHAN M.; ROBOTHAM, JULIE V.; COOPER, BEN S.; et al. Effectiveness of infection prevention and control interventions, excluding personal protective equipment, to prevent nosocomial transmission of SARS-CoV-2: a systematic review and call for action. INFECTION PREVENTION IN PRACTICE, v. 4, n. 1, p. 12-pg., 2022-03-01. (18/14389-0)

IANI, FELIPE C. M.; GIOVANETTI, MARTA; FONSECA, VAGNER; SOUZA, WILLIAM M.; ADELINO, TALITA E. R.; XAVIER, JOILSON; JESUS, JAQUELINE G.; PEREIRA, MAIRA A.; SILVA, MARCOS V. F.; COSTA, ALANA V. B.; et al. Epidemiology and evolution of Zika virus in Minas Gerais, Southeast Brazil. INFECTION GENETICS AND EVOLUTION, v. 91, JUL 2021. (18/14389-0, 17/13981-0, 18/17176-8, 19/12000-1, 19/24251-9)

FARIA, NUNO R.; MELLAN, THOMAS A.; WHITTAKER, CHARLES; CLARO, INGRA M.; CANDIDO, DARLAN DA S.; MISHRA, SWAPNIL; CRISPIM, MYUKI A. E.; SALES, FLAVIA C.; HAWRYLUK, IWONA; MCCRONE, JOHN T.; et al. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science, v. 372, n. 6544, p. 815+, MAY 21 2021. (20/04558-0, 19/21568-1, 19/21301-5, 18/14389-0, 17/13981-0, 20/04272-9, 18/25468-9, 16/18445-7, 19/21858-0, 18/17176-8, 19/12000-1, 19/07544-2, 18/12579-7, 19/24251-9)

FONSECA, PAULA L. C.; MOREIRA, FILIPE R. R.; DE SOUZA, RAFAEL M.; GUIMARAES, NATALIA R.; CARVALHO, NARA O.; ADELINO, TALITA E. R.; ALVES, HUGO J.; ALVIM, LUIGE B.; CANDIDO, DARLAN S.; COELHO, HELENA P.; et al. Tracking the turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian state (Minas Gerais) with a high-vaccination status. VIRUS EVOLUTION, v. 8, n. 2, p. 16-pg., 2022-08-06. (18/14389-0)

DELLICOUR, SIMON; GILL, MANDEV S.; FARIA, NUNO R.; RAMBAUT, ANDREW; PYBUS, OLIVER G.; SUCHARD, MARC A.; LEMEY, PHILIPPE. Relax, Keep Walking - A Practical Guide to Continuous Phylogeographic Inference with BEAST. Molecular Biology and Evolution, v. 38, n. 8, p. 3486-3493, AUG 2021. (18/14389-0)

NICOLETE, VANESSA C.; RODRIGUES, PRISCILA T.; FERNANDES, ANDERSON R. J.; CORDER, RODRIGO M.; TONINI, JULIANA; BUSS, LEWIS F.; SALES, FLAVIA C.; FARIA, NUNO R.; SABINO, ESTER C.; CASTRO, MARCIA C.; et al. Epidemiology of COVID-19 after Emergence of SARS-CoV-2 Gamma Variant, Brazilian Amazon, 2020-2021. Emerging Infectious Diseases, v. 28, n. 3, p. 4-pg., 2022-03-01. (20/04505-3, 16/18740-9, 18/14389-0)

FERREIRA, GIULIA MAGALHAES; CLARO, INGRA MORALES; GROSCHE, VICTORIA RIQUENA; CANDIDO, DARLAN; JOSE, DIEGO PANDELO; ROCHA, ESMENIA COELHO; COLETTI, THAIS DE MOURA; MANULI, ERIKA REGINA; GABURO JR, NELSON; FARIA, NUNO RODRIGUES; et al. Molecular characterization and sequecing analysis of SARS-CoV-2 genome in Minas Gerais, Brazil. BIOLOGICALS, v. 80, p. 10-pg., 2022-10-01. (18/17176-8, 18/14389-0, 19/12000-1)