Modeling of the spatiotemporal dispersion of emergent arboviruses using heterogeneous data sources in the State of São Paulo

• Grant number: 19/12000-1
• Support Opportunities: Scholarships in Brazil - Post-Doctoral
• Start date: July 01, 2019
• End date: June 30, 2022
• Field of knowledge: Health Sciences - Medicine - Medical Clinics
• Agreement: MRC, UKRI ; Newton Fund, with FAPESP as a partner institution in Brazil
• Principal Investigator: Ester Cerdeira Sabino
• Grantee: Jaqueline Goes de Jesus
• Host Institution: Faculdade de Medicina (FM). Universidade de São Paulo (USP). São Paulo , SP, Brazil
• Associated research grant: 18/14389-0 - Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE), AP.TEM
• Associated scholarship(s): 20/13395-7 - Genomic epidemiology of emerging arbovirus using heterogeneous data sources in the state of São Paulo, BE.EP.PD

Abstract

The present work intends to analyze transmission patterns of emerging sylvatic arbovirus diseases (Yellow Fever, YFV, West Nile Virus, WNV, Saint Louis Encephalities, SLEV, among others), simultaneously analysing different available sources of information such as genome sequences, human density and movements and vector/vertebrate hosts natural history. The aim is to conciliate genetic information, cartographic and mathematical epidemiology, and natural history of vector and vertebrate hosts in order to produce an analytical framework that simultaneously analyses different data sources with pathogen genomes in order to recostruct transmission events through time and space, clarifying the occurrence and distribution of these viruses.

Scientific publications

(5)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

IANI, FELIPE C. M.; GIOVANETTI, MARTA; FONSECA, VAGNER; SOUZA, WILLIAM M.; ADELINO, TALITA E. R.; XAVIER, JOILSON; JESUS, JAQUELINE G.; PEREIRA, MAIRA A.; SILVA, MARCOS V. F.; COSTA, ALANA V. B.; et al. Epidemiology and evolution of Zika virus in Minas Gerais, Southeast Brazil. INFECTION GENETICS AND EVOLUTION, v. 91, JUL 2021. (18/14389-0, 17/13981-0, 18/17176-8, 19/12000-1, 19/24251-9)

FARIA, NUNO R.; MELLAN, THOMAS A.; WHITTAKER, CHARLES; CLARO, INGRA M.; CANDIDO, DARLAN DA S.; MISHRA, SWAPNIL; CRISPIM, MYUKI A. E.; SALES, FLAVIA C.; HAWRYLUK, IWONA; MCCRONE, JOHN T.; et al. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science, v. 372, n. 6544, p. 815+, MAY 21 2021. (20/04558-0, 19/21568-1, 19/21301-5, 18/14389-0, 17/13981-0, 20/04272-9, 18/25468-9, 16/18445-7, 19/21858-0, 18/17176-8, 19/12000-1, 19/07544-2, 18/12579-7, 19/24251-9)

FERREIRA, GIULIA MAGALHAES; CLARO, INGRA MORALES; GROSCHE, VICTORIA RIQUENA; CANDIDO, DARLAN; JOSE, DIEGO PANDELO; ROCHA, ESMENIA COELHO; COLETTI, THAIS DE MOURA; MANULI, ERIKA REGINA; GABURO JR, NELSON; FARIA, NUNO RODRIGUES; et al. Molecular characterization and sequecing analysis of SARS-CoV-2 genome in Minas Gerais, Brazil. BIOLOGICALS, v. 80, p. 10-pg., 2022-10-01. (18/17176-8, 18/14389-0, 19/12000-1)

THAÍS DE MOURA COLETTI; CAMILA MALTA ROMANO; PAULO ROBERTO URBINATTI; RENILDO SOUZA TEIXEIRA; LEILA WEISS DE ALMEIDA PEDROSA; MARCELLO SCHIAVO NARDI; DELSIO NATAL; ANTÔNIO CHARLYS DA COSTA; JAQUELINE GOES DE JESUS; INGRA MORALES CLARO; et al. Characterization of insect-specific Culex flavivirus (Flaviviridae) nucleotide sequences in mosquitoes from urban parks in São Paulo, Brazil. Revista da Sociedade Brasileira de Medicina Tropical, v. 55, 2022-09-26. (17/00021-9, 18/17176-8, 19/03859-9, 18/14389-0, 16/18204-0, 19/12000-1, 10/51230-8)

CANDIDO, DARLAN S.; CLARO, INGRA M.; DE JESUS, JAQUELINE G.; SOUZA, WILLIAM M.; MOREIRA, FILIPE R. R.; DELLICOUR, SIMON; MELLAN, THOMAS A.; DU PLESSIS, LOUIS; PEREIRA, RAFAEL H. M.; SALES, FLAVIA C. S.; et al. Evolution and epidemic spread of SARS-CoV-2 in Brazil. Science, v. 369, n. 6508, SI, p. 1255+, SEP 4 2020. (20/04558-0, 16/00194-8, 19/21301-5, 18/14389-0, 18/14933-2, 17/13981-0, 20/04836-0, 18/25468-9, 16/18445-7, 18/09383-3, 18/17176-8, 19/12000-1, 19/07544-2, 19/24251-9)