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Aging and genetic disorders: genomics and metagenomics

Abstract

Healthy aging and longevity are a growing topic of interest. They depend on the complex interplay between nuclear and mitochondrial DNA, the environment and the microbiota, that is, the whole set of bacteria living in the different parts of our body with their whole set of genes. Understanding this complex nature versus nurture balance is one of the greatest challenges in human genetics and human health. What is the influence of genomic and epigenomic variants as well as immune system over aging? How much does our microbiome interfere in or contribute to our health or our diseases? Could our microbiome help explaining the missing heritability in complex disorders? This proposal aims to address these questions through different approaches and expertise. Data on cognitive maintenance, brain structure and function (MRI) will be obtained. Socio-demographic measures in various depths will contribute to establish the panorama of environmental contributions and their influence on health and longevity. Functional models, particularly at the cellular level, will be an essential part of the array of techniques we plan to deploy in order to understand specific mechanisms behind normal and pathological aging processes. In an attempt to enhance our comprehension on these questions we will investigate three large samples of individuals: a) healthy individuals from São Paulo older than 60 who have been followed for many years and will be the study sample of most of the proposed projects in our portfolio (SABE cohort); b) a collection of data from individuals over 50 years of age who died of natural causes, from the Brazilian brain bank; c) a sample of individuals with genetic disorders associated with accelerated deterioration or complex disorders that could be partly caused by the human microbiome. Individuals enrolled in the São Paulo population-based samples have a highly admixed background and might have a different structure from the populations of other Brazilian regions. Therefore, in order to validate our molecular findings in other Brazilian populations, we also plan to incorporate populations from different regions and ethnic and environmental backgrounds: Aquilombo population, which is mainly African-derived and a cohort from Paraíba, which is highly inbred. Additionally, it will be included one sample of nonagenarians’ individuals and other of overweight adults with a high proportion of European (Italians, Germans, Pomeranians, Austrians and Portuguese) and Afro-Amerindian ancestry from Vitória (ES). Patients and animal models with focus on early aging diseases, and neuromuscular and neurodegenerative disorders will be investigated. Our main goal is to elucidate factors playing major roles in the wide range of variation observed in aging, also taking advantage of pathological genetic phenotypes, to enhance our understanding on normal longevity. In order to achieve this goal, the establishment of the present network, with researchers from different States, is fundamental. It will allow us to assemble a large collection of individuals of different ethnicities, which lack for the Brazilian population, and which is essential for the population-based studies here proposed. It is also important to point out that the group from S. Paulo has already a long-standing collaboration with the researchers from other States which has already resulted in several publications. Another aim of this proposal is the Education project, disseminating Science, which aims to stimulate the curiosity and to motivate the public for topics related to Genetics. Posters with provocative questions on Genetics will be distributed on subway stations, bus terminals and in public schools, referring to a hot site that can be accessed by mobile phone. The first campaign, "Similar, but different", is underway in São Paulo (http://www.qenoma.ib.usp.br). The research partners of other states will coordinate these campaigns in their own regions. In order to achieve all these goals we have assembled a group of expertise in different areas of interest, such as molecular biology (at the nuclear and mitochondrial DNA, RNA or protein level), others with experience on imaging, as well as immunology, metagenomics and bioinformatics and computational science. (AU)

Articles published in Agência FAPESP Newsletter about the research grant:
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VEICULO: TITULO (DATA)
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Scientific publications (30)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
FIGUEIREDO, THALITA; MENDES, ANA P. D.; MOREIRA, DANIELLE P.; GOULART, ERNESTO; OLIVEIRA, DANYLLO; KOBAYASHI, GERSON S.; STERN, SHANI; KOK, FERNANDO; MARCHETTO, MARIA C.; SANTOS, RENATA; et al. Inositol monophosphatase 1 (IMPA1) mutation in intellectual disability patients impairs neurogenesis but not gliogenesis. MOLECULAR PSYCHIATRY, . (19/18469-1, 13/08028-1, 17/19877-0, 14/50931-3, 16/09618-5)
LEITE NOBREGA, JULIA CRISTINA; MEDEIROS, JULIANA BARBOSA; DE MELO SANTOS, TACILA THAMIRES; VIEIRA ALVES, SAIONARA ACUCENA; GOMES DA SILVA FREITAS, JAVANNA LACERDA; SILVA, JAIZA M. M.; MARIZ SIMOES, RAISA FERNANDES; BRITO, ALLISSON DE LIMA; WELLER, MATHIAS; DE FERREIRA SANTOS, JAIR LICIO; et al. ocioeconomic Factors and Health Status Disparities Associated with Difficulty in ADLs and IADLs among Long-Lived Populations in Brazil: A Cross-Sectional Stud. INQUIRY-THE JOURNAL OF HEALTH CARE ORGANIZATION PROVISION AND FINANCING, v. 58, . (14/50931-3, 09/53778-3, 05/54947-2, 13/08028-1)
NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; NUNES, KELLY; WANG, JAQUELINE Y. T.; YAMAMOTO, GUILHERME L.; GUIO, HEINNER; TARAZONA-SANTOS, EDUARDO; DUARTE, YEDA A. O.; PASSOS-BUENO, MARIA RITA; MEYER, DIOGO; et al. Biased pathogenic assertions of loss of function variants challenge molecular diagnosis of admixed individuals. AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS, . (13/08028-1, 14/50649-6, 14/50931-3)
GOULART, ERNESTO; DE CAIRES-JUNIOR, LUIZ CARLOS; TELLES-SILVA, KAYQUE ALVES; SILVA ARAUJO, BRUNO HENRIQUE; ROCCO, SILVANA APARECIDA; SFORCA, MAURICIO; DE SOUSA, IRENE LAYANE; KOBAYASHI, GERSON S.; MUSSO, CAMILA MANSO; ASSONI, AMANDA FARIA; et al. 3D bioprinting of liver spheroids derived from human induced pluripotent stem cells sustain liver function and viability in vitro. BIOFABRICATION, v. 12, n. 1, . (17/16283-2, 13/08028-1, 14/50931-3, 15/14821-1)
CASTELLI, ERICK C.; DE CASTRO, MATEUS V.; NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; SILVA, NAYANE S. B.; PEREIRA, RAPHAELA N.; CIRIACO, VIVIANE A. O.; CASTRO, CAMILA F. B.; MENDES-JUNIOR, CELSO T.; SILVEIRA, ETIELE DE S.; et al. MUC22, HLA-A, and HLA-DOB variants and COVID-19 in resilient super-agers from Brazil. FRONTIERS IN IMMUNOLOGY, v. 13, p. 15-pg., . (14/50931-3, 20/09702-1, 17/19223-0, 19/19998-8, 13/08028-1)
DE CASTRO, MATEUS V.; SILVA, MONIZE V. R.; OLIVEIRA, LUANA DE M.; GOZZI-SILVA, SARAH C.; NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; MAGALHAES, MONIZE L.; DA ROCHA, KATIA M.; NUNES, KELLY; CASTELLI, ERICK C.; et al. Immunological evaluation of young unvaccinated patients with Turner syndrome after COVID-19. INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, v. 129, p. 9-pg., . (13/08028-1, 14/50931-3, 20/09702-1)
WELSH, H.; BATALHA, C. M. P. F.; LI, W.; MPYE, K. L.; SOUZA-PINTO, N. C.; NASLAVSKY, M. S.; PARRA, E. J.. A systematic evaluation of normalization methods and probe replicability using infinium EPIC methylation data. CLINICAL EPIGENETICS, v. 15, n. 1, p. 12-pg., . (14/50649-6, 14/50931-3)
AMARAL, MURILO SENA; GOULART, ERNESTO; CAIRES-JUNIOR, LUIZ CARLOS; MORALES-VICENTE, DAVID ABRAHAM; SOARES-SCHANOSKI, ALESSANDRA; GOMES, ROSELANE PAIVA; OLBERG, GIOVANNA GONCALVES DE OLIVEIRA; ASTRAY, RENATO MANCINI; KALIL, JORGE E.; ZATZ, MAYANA; et al. Differential gene expression elicited by ZIKV infection in trophoblasts from congenital Zika syndrome discordant twins. PLoS Neglected Tropical Diseases, v. 14, n. 8, . (14/03620-2, 13/08028-1, 14/50931-3, 18/23693-5)
ZATZ, MAYANA; SILVA, MONIZE V. R.; DE CASTRO, MATEUS, V; NASLAVSKY, MICHEL S.. The 90 plus: longevity and COVID-19 survival. MOLECULAR PSYCHIATRY, v. 27, n. 4, p. 9-pg., . (20/09702-1, 13/08028-1, 14/50931-3)
SHELTON, G. DIANE; MINOR, KATIE M.; VIEIRA, NATASSIA M.; KUNKEL, LOUIS M.; FRIEDENBERG, STEVEN G.; CULLEN, JONAH N.; GUO, LING T.; ZATZ, MAYANA; MICKELSON, JAMES R.. Tandem duplication within the DMD gene in Labrador retrievers with a mild clinical phenotype. Neuromuscular Disorders, v. 32, n. 10, p. 6-pg., . (13/08028-1, 14/50931-3, 20/09702-1)
SILVA, JAIZA M. M.; FREITAS, JAVANNA LACERDA GOMES DA SILVA; NOBREGA, JULIA CRISTINA LEITE; MEDEIROS, JULIANA BARBOSA; SIMOES, RAISA FERNANDES MARIZ; OLINDA, RICARDO; SANTOS, JAIR LICIO DE FERREIRA; DUARTE, YEDA APARECIDA DE OLIVEIRA; ZATZ, MAYANA; MATHESON, DAVID; et al. Regional differences regarding the occurrence of falls and associated factors in two populations of Brazilian longevous people. BMC GERIATRICS, v. 22, n. 1, p. 11-pg., . (14/50931-3, 13/08028-1, 09/53778-3, 05/54947-2)
DE FARIAS, ALLYSSON ALLAN; NUNES, KELLY; LEMES, RENAN BARBOSA; MOURA, RONALD; FERNANDES, GUSTAVO RIBEIRO; MELO, UIRA SOUTO; ZATZ, MAYANA; KOK, FERNANDO; SANTOS, SILVANA. Origin and age of the causative mutations in KLC2, IMPA1, MED25 and WNT7A unravelled through Brazilian admixed populations. SCIENTIFIC REPORTS, v. 8, . (13/08028-1, 14/50931-3)
LIMA, SHIRLEY O. A.; FARIAS, ALLYSSON A.; ALBINO, VICTOR A.; MARQUES-ALVES, YANNA K.; OLINDA, RICARDO; SANTOS-SILVA, TAIS A.; ALVES, LEANDRO U.; ZATZ, MAYANA; SANTOS, SILVANA. A population-based study of inter-generational attitudes towards consanguineous marriages in north-eastern Brazil. JOURNAL OF BIOSOCIAL SCIENCE, v. 51, n. 5, p. 683-697, . (13/08028-1, 14/50931-3)
GALDINO GALISA, STEFFANY LARISSA; JACOB, PRISCILA LIMA; DE FARIAS, ALLYSSON ALLAN; LEMES, RENAN BARBOSA; ALVES, LEANDRO UCELA; LEITE NOBREGA, JULIA CRISTINA; ZATZ, MAYANA; SANTOS, SILVANA; WELLER, MATHIAS. aplotypes of single cancer driver genes and their local ancestry in a highly admixed long-lived population of Northeast Brazi. GENETICS AND MOLECULAR BIOLOGY, v. 45, n. 1, . (14/50931-3, 13/08028-1)
BRIDE, LAIS; NASLAVSKY, MICHEL; YAMAMOTO, GUILHERME LOPES; SCLIAR, MARILIA; PIMASSONI, LUCIA H. S.; AGUIAR, PAOLA SOSSAI; DE PAULA, FLAVIA; WANG, JAQUELINE; DUARTE, YEDA; PASSOS-BUENO, MARIA RITA; et al. TCF7L2 rs7903146 polymorphism association with diabetes and obesity in an elderly cohort from Brazil. PeerJ, v. 9, . (13/08028-1, 14/50931-3)
ROMANELLI TAVARES, VANESSA LUIZA; MONFARDINI, FREDERICO; LOURENCO, NAILA CRISTINA VILACA; DA ROCHA, KATIA MARIA; WEINMANN, KARINA; PAVANELLO, RITA; ZATZ, MAYANA. Newborn Screening for 5q Spinal Muscular Atrophy: Comparisons between Real-Time PCR Methodologies and Cost Estimations for Future Implementation Programs. INTERNATIONAL JOURNAL OF NEONATAL SCREENING, v. 7, n. 3, . (14/50931-3)
NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; NUNES, KELLY; WANG, JAQUELINE Y. T.; YAMAMOTO, GUILHERME L.; GUIO, HEINNER; TARAZONA-SANTOS, EDUARDO; DUARTE, YEDA A. O.; PASSOS-BUENO, MARIA RITA; MEYER, DIOGO; et al. Biased pathogenic assertions of loss of function variants challenge molecular diagnosis of admixed individuals. AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS, v. 187, n. 3, SI, p. 357-363, . (13/08028-1, 14/50649-6, 14/50931-3)
FIGUEIREDO, THALITA; MENDES, ANA P. D.; MOREIRA, DANIELLE P.; GOULART, ERNESTO; OLIVEIRA, DANYLLO; KOBAYASHI, GERSON S.; STERN, SHANI; KOK, FERNANDO; MARCHETTO, MARIA C.; SANTOS, RENATA; et al. Inositol monophosphatase 1 (IMPA1) mutation in intellectual disability patients impairs neurogenesis but not gliogenesis. MOLECULAR PSYCHIATRY, v. 26, n. 7, p. 3558-3571, . (16/09618-5, 17/19877-0, 13/08028-1, 19/18469-1, 14/50931-3)
MICHEL SATYA NASLAVSKY; MATEUS VIDIGAL; LARISSA DO RÊGO BARROS MATOS; VIVIAN ROMANHOLI CÓRIA; PEDRO BENEDITO BATISTA JUNIOR; ÁLVARO RAZUK; PAULO HILÁRIO NASCIMENTO SALDIVA; MARISA DOLHNIKOFF; LAIRE SCHIDLOWSKI; CAROLINA PRANDO; et al. Extreme phenotypes approach to investigate host genetics and COVID-19 outcomes. GENETICS AND MOLECULAR BIOLOGY, v. 44, n. 1, . (14/50931-3, 13/08028-1)
NASLAVSKY, MICHEL SATYA; VIDIGAL, MATEUS; BARROS MATOS, LARISSA DO REGO; CORIA, VIVIAN ROMANHOLI; BATISTA JUNIOR, PEDRO BENEDITO; RAZUK, ALVARO; NASCIMENTO SALDIVA, PAULO HILARIO; DOLHNIKOFF, MARISA; SCHIDLOWSKI, LAIRE; PRANDO, CAROLINA; et al. Extreme phenotypes approach to investigate host genetics and COVID-19 outcomes. GENETICS AND MOLECULAR BIOLOGY, v. 44, n. 1, 1, . (13/08028-1, 14/50931-3)
PALMEIRA, ONDINA; MATOS, LARISSA R. B.; NASLAVSKY, MICHEL S.; BUENO, HELOISA M. S.; SOLER, JULIA P.; SETUBAL, JOAO C.; ZATZ, MAYANA. Longitudinal 16S rRNA gut microbiota data of infant triplets show partial susceptibility to host genetics. ISCIENCE, v. 25, n. 3, p. 19-pg., . (14/50931-3, 13/08028-1)
NASLAVSKY, MICHEL SATYA; SUEMOTO, CLAUDIA K.; BRITO, LUCIANO ABREU; SCLIAR, MARILIA OLIVEIRA; FERRETTI-REBUSTINI, RENATA ELOAH; RODRIGUEZ, ROBERTA DIEHL; LEITE, RENATA E. P.; ARAUJO, NATHALIA MATTA; BORDA, VICTOR; TARAZONA-SANTOS, EDUARDO; et al. Global and local ancestry modulate APOE association with Alzheimer's neuropathology and cognitive outcomes in an admixed sample. MOLECULAR PSYCHIATRY, v. 27, n. 11, p. 9-pg., . (16/24326-0, 13/08028-1, 06/55318-1, 18/16626-0, 14/50931-3, 09/09134-4)
CASTELLI, ERICK C.; DE CASTRO, V, MATEUS; NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; SILVA, NAYANE S. B.; ANDRADE, HELOISA S.; SOUZA, ANDREIA S.; PEREIRA, RAPHAELA N.; CASTRO, CAMILA F. B.; MENDES-JUNIOR, CELSO T.; et al. MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals. FRONTIERS IN IMMUNOLOGY, v. 12, . (13/08028-1, 19/19998-8, 20/09702-1, 17/19223-0, 14/50931-3)
PING HSIA, GABRIELLA SHIH; ESPOSITO, JOYCE; DA ROCHA, LETICIA ALVES; GUIMARAES RAMOS, SOFIA LIGIA; OKAMOTO, OSWALDO KEITH. Clinical Application of Human Induced Pluripotent Stem Cell-Derived Organoids as an Alternative to Organ Transplantation. STEM CELLS INTERNATIONAL, v. 2021, . (14/50931-3, 13/08028-1)
LEITE NOBREGA, JULIA CRISTINA; MEDEIROS, JULIANA BARBOSA; DE MELO SANTOS, TACILA THAMIRES; VIEIRA ALVES, SAIONARA ACUCENA; GOMES DA SILVA FREITAS, JAVANNA LACERDA; SILVA, JAIZA M. M.; MARIZ SIMOES, RAISA FERNANDES; BRITO, ALLISSON DE LIMA; WELLER, MATHIAS; DE FERREIRA SANTOS, JAIR LICIO; et al. Socioeconomic Factors and Health Status Disparities Associated with Difficulty in ADLs and IADLs among Long-Lived Populations in Brazil: A Cross-Sectional Study. INQUIRY-THE JOURNAL OF HEALTH CARE ORGANIZATION PROVISION AND FINANCING, v. 58, p. 11-pg., . (14/50931-3, 13/08028-1, 09/53778-3)
DE CASTRO, MATEUS, V; SILVA, MONIZE V. R.; NASLAVSKY, MICHEL S.; SCLIAR, MARILIA O.; NUNES, KELLY; PASSOS-BUENO, MARIA RITA; CASTELLI, ERICK C.; MAGAWA, JHOSIENE Y.; ADAMI, FLAVIA L.; MORETTI, ANA I. S.; et al. The oldest unvaccinated Covid-19 survivors in South America. IMMUNITY & AGEING, v. 19, n. 1, p. 9-pg., . (14/50890-5, 17/19223-0, 14/50931-3, 13/08028-1)
DE CAIRES, JR., LUIZ CARLOS; GOULART, ERNESTO; MELO, UIRASOUTO; HENRIQUE ARAUJO, BRUNO SILVA; ALVIZI, LUCAS; SCHANOSKI, ALESSANDRA SOARES; DE OLIVEIRA, DANYLLO FELIPE; KOBAYASHI, GERSON SHIGERU; GRIESI-OLIVEIRA, KARINA; MUSSO, CAMILA MANSO; et al. Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells. NATURE COMMUNICATIONS, v. 9, . (14/50931-3, 14/03620-2, 13/08028-1)
NOBREGA, JULIA CRISTINA LEITE; MEDEIROS, JULIANA BARBOSA; DA SILVA FREITAS, JAVANNA LACERDA GOMES; SILVA, JAIZA M. M.; SIMOES, RAISA FERNANDES MARIZ; OLINDA, RICARDO; DE FERREIRA SANTOS, JAIR LICIO; MENEZES, TARCIANA NOBRE; DE OLIVEIRA DUARTE, YEDA APARECIDA; ZATZ, MAYANA; et al. sychosocial aspects and support networks associated with disability in two longevous populations in Brazil: a cross-sectional stud. BMC GERIATRICS, v. 22, n. 1, . (14/50931-3, 05/54947-2, 13/08028-1, 09/53778-3)
BERTHOLIM-NASCIBEN, LUCIANA; SCLIAR, MARILIA O.; DEBORTOLI, GUILHERME; THIRUVAHINDRAPURAM, BHOOMA; SCHERER, STEPHEN W.; DUARTE, YEDA A. O.; ZATZ, MAYANA; SUAREZ-KURTZ, GUILHERME; PARRA, ESTEBAN J.; NASLAVSKY, MICHEL S.. Characterization of pharmacogenomic variants in a Brazilian admixed cohort of elderly individuals based on whole-genome sequencing data. FRONTIERS IN PHARMACOLOGY, v. 14, p. 11-pg., . (13/08028-1, 14/50649-6, 14/50931-3)
FIGUEIREDO, T.; MENDES, A.; KOBAYASHI, G.; MOREIRA, D.; OLIVEIRA, D.; GOULART, E.; STERN, S.; KOK, F.; MARCHETTO, M.; SANTOS, R.; et al. Inositol monophosphatase 1 (IMPA1) mutation in intellectual disability patients impairs neurogenesis but not gliogenesis. European Journal of Human Genetics, v. 28, n. SUPPL 1, p. 1-pg., . (13/08028-1, 14/50931-3, 16/09618-5, 17/19877-0)