Modelos e métodos de e-Science para ciências da vida e agrárias

• Processo: 11/50761-2
• Modalidade de apoio: Auxílio à Pesquisa - Temático
• Data de Início da vigência: 01 de fevereiro de 2012
• Data de Término da vigência: 30 de setembro de 2016
• Área do conhecimento: Ciências Exatas e da Terra - Ciência da Computação
• Acordo de Cooperação: CNPq - Pronex
• Pesquisador responsável: Roberto Marcondes Cesar Junior
• Beneficiário: Roberto Marcondes Cesar Junior
• Instituição Sede: Instituto de Matemática e Estatística (IME). Universidade de São Paulo (USP). São Paulo , SP, Brasil
• Pesquisadores principais: Carlos Alberto Moreira Filho ; Claudia Maria Bauzer Medeiros ; Luciano da Fontoura Costa
• Auxílio(s) vinculado(s): 14/50769-1 - Hand tracking for occupational therapy, AP.R SPRINT; 15/05953-1 - ISMM 2015 - 12th International Symposium on Mathematical Morphology, AR.EXT; 14/50135-2 - Learning salient elements from videos using structural and temporal information, AP.R; + mais auxílios vinculados 13/25918-0 - Visita do prof. Dr. Stéphane Canu ao IME-USP, AV.EXT; 13/03535-2 - 11th International Symposium on Mathematical Morphology (ISMM 2013), AR.EXT; 12/50986-7 - Graph spectra and complex network evolution, AP.R; 12/08637-5 - Visita da Profa. Dr. Florence Tupin ao IME-USP, AV.EXT - menos auxílios vinculados
• Bolsa(s) vinculada(s): 16/13791-4 - Um arcabouço para análise e rastreamento de gestos de mão: casos com formas e movimentos não usuais, BP.DR; 15/13430-9 - Enumerando histórias metabólicas multidimensionais: modelos e métodos, BP.PD; 15/18942-8 - Associando Redes Complexas com Espaços Efetivos de Atributos, BP.PD; + mais bolsas vinculadas 15/18117-7 - Método para amostragem de experiências e intervenção programada (ESPIM), BP.PD; 15/08003-4 - Abordagem de redes complexas em e-Science e dados dinâmicos, BP.PD; 15/07252-0 - Documentos interativos para coleta especializada de experiências do cotidiano: operações para autoria, compartilhamento e análise, BP.DR; 15/11693-2 - Programa de atividades e justificativa para bolsa de treinamento técnico V: gerente dos projetos de software livre ligados ao projeto temático, BP.TT; 14/24918-0 - Deep learning fracamente supervisionado para detecção de faces e atributos de pessoas, BP.DR; 15/03475-5 - Olhando para a cidade: big data e visão computacional para análise de ambientes urbanos, BP.IC; 14/06549-7 - Programa de atividades e justificativa para bolsa de treinamento técnico V: gerente dos projetos de software livre ligados ao projeto temático, BP.TT; 13/00613-2 - Modelos e métodos de e-Science para ciências da vida e agrárias, BP.TT; 12/19164-0 - Proposta de uma metodologia quantitativa de análise do jogo em esportes coletivos de invasão baseada em um modelo formal de estratégia: aplicação ao basquetebol e ao futebol, BP.PD; 12/16072-8 - Gerente dos projetos de software livre ligados ao projeto temático, BP.TT - menos bolsas vinculadas
• Assunto(s): Banco de dados Biologia computacional Mineração de dados Reconhecimento de padrões
• Palavra(s)-Chave do Pesquisador: Bancos De Dados | Bioinformatica | Biologia De Sistemas | Escience | Mineracao De Dados | Reconhecimento De Padroes

Resumo

A ciência moderna é crescentemente interdisciplinar e intensiva em dados. Na área de ciências da vida, por exemplo, com o surgimento de plataformas de alto desempenho para análise de imagens e estudos genômicos, o gargalo não está mais na aquisição de dados, mas sim no seu armazenamento, processamento, análise e visualização. Este cenário levou ao surgimento de um novo campo de pesquisa - eScience - que combina pesquisa avançada em computação e em modelagem matemática para permitir e acelerar pesquisa em outros domínios do conhecimento, desde as ciências exatas até as humanidades e artes. A eScience envolve a chamada "computação centrada em dados" (data-intensive computing), com a busca de soluções para gerenciamento de grandes volumes de dados produzidos por (e para) experimentos científicos, para que a descoberta científica não venha a ser detida pelo "dilúvio de dados". Este projeto visa a criação de uma rede colaborativa de eScience para acelerar pesquisa avançada em ciências da vida (biologia, medicina, oceanografia) e ciências agrárias. Está estruturado em tomo de cinco linhas de pesquisa - biologia de sistemas, planejamento de safras, computação visual, modelagem matemática e bancos de dados. Dentro dessas linhas, serão tratadas questões em aberto associadas às principais componentes de um ambiente de pesquisa em eScience: armazenamento, processamento, análise e visualização de grandes volumes de dados científicos. Os pesquisadores principais têm histórico de cooperação e coordenação de projetos nessas linhas. Questões de interoperalidade permeiam todo o projeto. (AU)

Publicações científicas

(148)

(Referências obtidas automaticamente do Web of Science e do SciELO, por meio da informação sobre o financiamento pela FAPESP e o número do processo correspondente, incluída na publicação pelos autores)

YE, CHENG; WILSON, RICHARD C.; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HANCOCK, EDWIN R.. Approximate von Neumann entropy for directed graphs. Physical Review E, v. 89, n. 5, MAY 12 2014. (12/50986-7, 11/50761-2, 11/22639-8)

MACEDO, MAYSA M. G.; GUIMARAES, WELINGSON V. N.; GALON, MICHELI Z.; TAKIMURA, CELSO K.; LEMOS, PEDRO A.; GUTIERREZ, MARCO ANTONIO. A bifurcation identifier for IV-OCT using orthogonal least squares and supervised machine learning. Computerized Medical Imaging and Graphics, v. 46, n. 2, SI, p. 237-248, DEC 2015. (13/09922-8, 11/50761-2)

SIMOES, SERGIO N.; MARTINS, JR., DAVID C.; PEREIRA, CARLOS A. B.; HASHIMOTO, RONALDO F.; BRENTANI, HELENA. NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. BMC Bioinformatics, v. 16, n. 19, DEC 16 2015. (11/50761-2, 10/52138-8)

EROGLU, DENIZ; PERON, THOMAS K. D. M.; MARWAN, NOBERT; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; SEBEK, MICHAEL; KISS, ISTVAN Z.; KURTHS, JUERGEN. Entropy of weighted recurrence plots. Physical Review E, v. 90, n. 4, OCT 21 2014. (12/22160-7, 13/26416-9, 11/50761-2)

DE ARRUDA, GUILHERME FERRAZ; BARBIERI, ANDRE LUIZ; RODRIGUEZ, PABLO MARTIN; RODRIGUES, FRANCISCO A.; MORENO, YAMIR; COSTA, LUCIANO DA FONTOURA. Role of centrality for the identification of influential spreaders in complex networks. Physical Review E, v. 90, n. 3, SEP 22 2014. (13/26416-9, 13/03898-8, 11/50761-2)

AMANCIO, DIEGO R.; OLIVEIRA, JR., OSVALDO N.; COSTA, L. DA F.. Robustness of community structure to node removal. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, MAR 2015. (14/20830-0, 11/50761-2, 13/06717-4)

DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR JR, ROBERTO M.. Scalable object instance recognition based on keygraph matching. PATTERN RECOGNITION LETTERS, v. 114, n. SI, p. 53-62, OCT 15 2018. (14/50769-1, 15/22308-2, 11/50761-2)

SWARNKAR, TRIPTI; SIMOES, SERGIO NERY; ANURA, ANJI; BRENTANI, HELENA; CHATTERJEE, JYOTIRMOY; HASHIMOTO, RONALDO FUMIO; MARTINS, DAVID CORREA; MITRA, PABITRA. Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, DEC 2015. (11/50761-2, 10/52138-8)

SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2019. (15/22308-2, 15/08003-4, 17/09280-7, 15/18942-8, 13/07375-0, 18/09125-4, 11/50761-2)

DOMINGUES, G. S.; SILVA, F. N.; COMIN, C. H.; COSTA, L. DA F.. Topological characterization of world cities. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2018. (17/09280-7, 15/22308-2, 11/50761-2, 15/18942-8, 15/08003-4)

COMIN, CESAR HENRIQUE; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA. A diffusion-based approach to obtaining the borders of urban areas. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, MAY 2016. (11/22639-8, 11/50761-2)

DIAS PEDRO, RICARDO WANDRE; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Towards an approach using grammars for automatic classification of masses in mammograms. COMPUTATIONAL INTELLIGENCE, APR 2020. (11/50761-2)

YE, CHENG; COMIN, CESAR H.; PERON, THOMAS K. D. M.; SILVA, FILIPI N.; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; TORSELLO, ANDREA; HANCOCK, EDWIN R.. Thermodynamic characterization of networks using graph polynomials. Physical Review E, v. 92, n. 3, SEP 25 2015. (13/26416-9, 11/22639-8, 12/22160-7, 12/50986-7, 11/50761-2)

OLIVEIRA, MAURO DE MEDEIROS; BONADIO, IGOR; DE MELO, ALICIA LIE; SOUZA, GLAUCIA MENDES; DURHAM, ALAN MITCHELL. TSSFinder-fast and accurate ab initio prediction of the core promoter in eukaryotic genomes. BRIEFINGS IN BIOINFORMATICS, v. 22, n. 6, NOV 2021. (11/50761-2, 14/50921-8)

BANDO, SILVIA Y.; IAMASHITA, PRISCILA; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; ABE, CECILIA M.; BERTONHA, FERNANDA B.; GUTH, BEATRIZ E. C.; FUJITA, ANDRE; MOREIRA-FILHO, CARLOS A.. Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic-Uremic Syndrome. MICROORGANISMS, v. 7, n. 7, JUL 2019. (15/22308-2, 11/50761-2)

GEWERS, FELIPE L.; FERREIRA, GUSTAVO R.; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Principal Component Analysis: A Natural Approach to Data Exploration. ACM COMPUTING SURVEYS, v. 54, n. 4, JUL 2021. (17/13464-6, 18/09125-4, 15/22308-2, 16/19069-9, 18/10489-0, 11/50761-2, 19/16223-5)

AZEVEDO, HATYLAS; MOREIRA-FILHO, CARLOS ALBERTO. Topological robustness analysis of protein interaction networks reveals key targets for overcoming chemotherapy resistance in glioma. SCIENTIFIC REPORTS, v. 5, NOV 19 2015. (11/50761-2)

FELTRIN, ARTHUR SANT'ANNA; TAHIRA, ANA CAROLINA; SIMOES, SERGIO NERY; BRENTANI, HELENA; MARTINS, JR., DAVID CORREA. Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders. PLoS One, v. 14, n. 1, JAN 15 2019. (11/04956-6, 11/50761-2, 14/00041-1, 14/10488-3, 15/01587-0)

DE ARRUDA, HENRIQUE FERRAZ; SILVA, FILIPI NASCIMENTO; MARINHO, VANESSA QUEIROZ; AMANCIO, DIEGO RAPHAEL; COSTA, LUCIANO DA FONTOURA. Representation of texts as complex networks: a mesoscopic approach. JOURNAL OF COMPLEX NETWORKS, v. 6, n. 1, p. 125-144, FEB 2018. (16/19069-9, 11/50761-2, 15/05676-8, 14/20830-0, 15/08003-4)

DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Knowledge acquisition: A Complex networks approach. INFORMATION SCIENCES, v. 421, p. 154-166, DEC 2017. (14/20830-0, 16/19069-9, 11/50761-2, 15/08003-4)

SANTOS, SUZANA DE SIQUEIRA; DE ALMEIDA GALATRO, THAIS FERNANDA; WATANABE, RODRIGO AKIRA; OBA-SHINJO, SUELI MIEKO; NAGAHASHI MARIE, SUELY KAZUE; FUJITA, ANDRE. CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra. PLoS One, v. 10, n. 8, AUG 27 2015. (14/09576-5, 12/25417-9, 11/50761-2, 13/03447-6)

MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; BERTONHA, FERNANDA BERNARDI; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; FERREIRA, LEANDRO RODRIGUES; FURLANETTO, GLAUCIO; CHACUR, PAULO; NOGUEIRA ZERBINI, MARIA CLAUDIA; CARNEIRO-SAMPAIO, MAGDA. Modular transcriptional repertoire and MicroRNA target analyses characterize genomic dysregulation in the thymus of Down syndrome infants. ONCOTARGET, v. 7, n. 7, p. 7497-7533, FEB 16 2016. (08/58238-4, 14/50489-9, 05/00587-5, 11/50761-2, 09/53443-1)

DE ARRUDA, HENRIQUE FERRAZ; COMIN, CESAR HENRIQUE; MIAZAKI, MAURO; VIANA, MATHEUS PALHARES; COSTA, LUCIANO DA FONTOURA. A framework for analyzing the relationship between gene expression and morphological, topological, and dynamical patterns in neuronal networks. JOURNAL OF NEUROSCIENCE METHODS, v. 245, p. 1-14, APR 30 2015. (07/50988-1, 11/50761-2, 11/22639-8)

MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; BERTONHA, FERNANDA BERNARDI; IAMASHITA, PRISCILA; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; SILVA, ALEXANDRE VALOTTA; MARTINS CASTRO, LUIZ HENRIQUE; WEN, HUNG-TZU. Community Structure Analysis of Transcriptional Networks Reveals Distinct Molecular Pathways for Early- and Late-Onset Temporal Lobe Epilepsy with Childhood Febrile Seizures. PLoS One, v. 10, n. 5, MAY 26 2015. (05/56446-0, 05/00587-5, 11/50761-2, 09/53443-1)

DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Connecting network science and information theory. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 515, p. 641-648, FEB 1 2019. (15/18942-8, 16/19069-9, 14/20830-0, 15/08003-4, 11/50761-2)

DE ARRUDA, GUILHERME FERRAZ; LEBENSZTAYN, ELCIO; RODRIGUES, FRANCISCO A.; RODRIGUEZ, PABLO MARTIN. A process of rumour scotching on finite populations. ROYAL SOCIETY OPEN SCIENCE, v. 2, n. 9, SEP 2015. (13/26416-9, 12/25219-2, 13/03898-8, 11/50761-2, 12/22673-4)

CORREA, DEBORA C.; AP RODRIGUES, FRANCISCO. A survey on symbolic data-based music genre classification. EXPERT SYSTEMS WITH APPLICATIONS, v. 60, p. 190-210, OCT 30 2016. (11/50761-2, 13/26416-9, 12/17961-0)

DE ARRUDA, HENRIQUE F.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Topic segmentation via community detection in complex networks. Chaos, v. 26, n. 6, JUN 2016. (14/20830-0, 11/50761-2)

LACOSTE, BAPTISTE; COMIN, CESAR H.; BEN-ZVI, AYAL; KAESER, PASCAL S.; XU, XIAOYIN; COSTA, LUCIANO DA F.; GU, CHENGHUA. Sensory-Related Neural Activity Regulates the Structure of Vascular Networks in the Cerebral Cortex. NEURON, v. 83, n. 5, p. 1117-1130, SEP 3 2014. (11/22639-8, 11/50761-2)

COMIN, CESAR H.; SANTOS, JOAO R.; CORRADINI, DARIO; MORRISON, WILL; CURME, CHESTER; ROSENE, DOUGLAS L.; GABRIELLI, ANDREA; COSTA, LUCIANO DA F.; STANLEY, H. EUGENE. Statistical physics approach to quantifying differences in myelinated nerve fibers. SCIENTIFIC REPORTS, v. 4, MAR 28 2014. (11/22639-8, 11/50761-2)

MIRANDA, PAULO A. V.; MANSILLA, LUCY A. C.. Oriented Image Foresting Transform Segmentation by Seed Competition. IEEE Transactions on Image Processing, v. 23, n. 1, p. 389-398, JAN 2014. (11/50761-2, 12/06911-2)

LOPES, FABRICIO M.; RAY, SHUBHRA SANKAR; HASHIMOTO, RONALDO F.; CESAR, JR., ROBERTO M.. Entropic Biological Score: a cell cycle investigation for GRNs inference. Gene, v. 541, n. 2, p. 129-137, MAY 15 2014. (11/50761-2, 10/52138-8)

JI, PENG; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; KURTHS, JUERGEN. Low-dimensional behavior of Kuramoto model with inertia in complex networks. SCIENTIFIC REPORTS, v. 4, MAY 2 2014. (13/26416-9, 11/50761-2)

AMANCIO, DIEGO RAPHAEL; COMIN, CESAR HENRIQUE; CASANOVA, DALCIMAR; TRAVIESO, GONZALO; BRUNO, ODEMIR MARTINEZ; RODRIGUES, FRANCISCO APARECIDO; COSTA, LUCIANO DA FONTOURA. A Systematic Comparison of Supervised Classifiers. PLoS One, v. 9, n. 4, APR 24 2014. (13/06717-4, 10/00927-9, 11/22639-8, 13/14984-2, 10/19440-2, 14/04930-5, 11/50761-2)

LOPES, FABRICIO M.; MARTINS, JR., DAVID C.; BARRERA, JUNIOR; CESAR, JR., ROBERTO M.. A feature selection technique for inference of graphs from their known topological properties: Revealing scale-free gene regulatory networks. INFORMATION SCIENCES, v. 272, p. 1-15, JUL 10 2014. (11/50761-2)

AMANCIO, DIEGO R.; ALUISIO, SANDRA M.; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. Complex networks analysis of language complexity. EPL, v. 100, n. 5, DEC 2012. (11/50761-2, 10/00927-9)

AMANCIO, DIEGO RAPHAEL; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA FONTOURA. Identification of literary movements using complex networks to represent texts. NEW JOURNAL OF PHYSICS, v. 14, APR 23 2012. (11/50761-2, 10/00927-9)

BANDO, SILVIA YUMI; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; SILVA, ALEXANDRE V.; PIMENTEL-SILVA, LUCIANA R.; CASTRO, LUIZ H. M.; WEN, HUNG-TZU; AMARO, JR., EDSON; MOREIRA-FILHO, CARLOS ALBERTO. Complex Network Analysis of CA3 Transcriptome Reveals Pathogenic and Compensatory Pathways in Refractory Temporal Lobe Epilepsy. PLoS One, v. 8, n. 11, NOV 21 2013. (05/56446-0, 05/00587-5, 11/50761-2, 09/53443-1)

COMIN, CESAR H.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.. A framework for evaluating complex networks measurements. EPL, v. 110, n. 6, JUN 2015. (11/22639-8, 11/50761-2)

MIAZAKI, MAURO; VIANA, MATHEUS P.; YANG, ZHONG; COMIN, CESAR H.; WANG, YAMING; COSTA, LUCIANO DA F.; XU, XIAOYIN. Automated high-content morphological analysis of muscle fiber histology. COMPUTERS IN BIOLOGY AND MEDICINE, v. 63, p. 28-35, AUG 1 2015. (07/50988-1, 11/50761-2, 11/22639-8)

PINTO, SILVIA C. D.; URBANOVA, PETRA; CESAR, JR., ROBERTO M.. Two-Dimensional Wavelet Analysis of Supraorbital Margins of the Human Skull for Characterizing Sexual Dimorphism. IEEE Transactions on Information Forensics and Security, v. 11, n. 7, p. 1542-1548, JUL 2016. (11/50761-2)

COSTA, LUCIANO DA F.; SILVA, FILIPI NASCIMENTO; COMIN, CESAR H.. Characterizing BJTs using the Early voltage in the forward active mode. INTERNATIONAL JOURNAL OF CIRCUIT THEORY AND APPLICATIONS, v. 46, n. 4, p. 978-986, APR 2018. (15/18942-8, 15/08003-4, 11/50761-2)

AZEVEDO, HATYLAS; KHALED, NATHALIA AMATO; SANTOS, PAULA; BERTONHA, FERNANDA BERNARDI; MOREIRA-FILHO, CARLOS ALBERTO. Temporal analysis of hippocampal CA3 gene coexpression networks in a rat model of febrile seizures. Disease Models & Mechanisms, v. 11, n. 1, JAN 2018. (11/50761-2)

CORREA, JR., EDILSON A.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Patterns of authors contribution in scientific manuscripts. Journal of Informetrics, v. 11, n. 2, p. 498-510, MAY 2017. (14/20830-0, 16/19069-9, 11/50761-2, 15/08003-4)

DE ARRUDA, HENRIQUE F.; MARINHO, VANESSA Q.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Paragraph-based representation of texts: A complex networks approach. INFORMATION PROCESSING & MANAGEMENT, v. 56, n. 3, p. 479-494, MAY 2019. (17/13464-6, 15/22308-2, 16/19069-9, 11/50761-2, 15/05676-8)

BURKE, PAULO E. P.; COMIN, CESAR H.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.. Biological network border detection. INTEGRATIVE BIOLOGY, v. 9, n. 12, p. 947-955, DEC 2017. (15/18942-8, 11/50761-2, 15/08003-4)

GOUVEIA, AYDEN; SEEGOBIN, MATTHEW; KANNANGARA, TIMAL S.; HE, LING; WONDISFORD, FREDRIC; COMIN, CESAR H.; COSTA, LUCIANO DA F.; BEIQUE, JEAN-CLAUDE; LAGACE, DIANE C.; LACOSTE, BAPTISTE; et al. The aPKC-CBP Pathway Regulates Post-stroke Neurovascular Remodeling and Functional Recovery. STEM CELL REPORTS, v. 9, n. 6, p. 1735-1744, DEC 2017. (11/50761-2, 15/18942-8)

COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H.. A pattern recognition approach to transistor array parameter variance. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 499, p. 176-185, JUN 1 2018. (15/18942-8, 15/22308-2, 15/08003-4, 11/50761-2)

DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR-, ROBERTO M., JR.; IEEE. Efficient object recognition using sampling of keypoint triples and keygraph structure. 2016 29TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., 2016-01-01. (14/50769-1, 11/50761-2)

MORIMITSU, HENRIQUE; BLOCH, ISABELLE; CESAR-, ROBERTO M., JR.. Exploring structure for long-term tracking of multiple objects in sports videos. COMPUTER VISION AND IMAGE UNDERSTANDING, v. 159, p. 16-pg., 2017-06-01. (14/50135-2, 11/50761-2, 13/08258-7, 12/09741-0)

MOREIRA TAVARES, ANDERSON CARLOS; CCACYAHUILLCA BEJAR, HANS HARLEY; VECHIATTO MIRANDA, PAULO ANDRE; ANGULO, J; VELASCOFORERO, S; MEYER, F. Seed Robustness of Oriented Image Foresting Transform: Core Computation and the Robustness Coefficient. MATHEMATICAL MORPHOLOGY AND ITS APPLICATIONS TO SIGNAL AND IMAGE PROCESSING (ISMM 2017), v. 10225, p. 12-pg., 2017-01-01. (14/12236-1, 11/50761-2)

BANDO, SILVIA YUMI; IAMASHITA, PRISCILA; GUTH, BEATRIZ E.; DOS SANTOS, LUIS F.; FUJITA, ANDRE; ABE, CECILIA M.; FERREIRA, LEANDRO R.; MOREIRA-FILHO, CARLOS ALBERTO. A hemolytic-uremic syndrome-associated strain O113:H21 Shiga toxin-producing Escherichia coli specifically expresses a transcriptional module containing dicA and is related to gene network dysregulation in Caco-2 cells. PLoS One, v. 12, n. 12, DEC 18 2017. (11/50761-2, 15/22308-2)

SOUZA, PAULO J. P.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Topology and dynamics in complex networks: The role of edge reciprocity. EPL, v. 122, n. 2, APR 2018. (11/50761-2, 15/22308-2, 15/18942-8)

PERCIANO, T.; TUPIN, F.; HIRATA, JR., R.; CESAR, JR., R. M.. A two-level Markov random field for road network extraction and its application with optical, SAR, and multitemporal data. International Journal of Remote Sensing, v. 37, n. 16, p. 3584-3610, AUG 20 2016. (11/50761-2)

SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Seeking maximum linearity of transfer functions. Review of Scientific Instruments, v. 87, n. 12, DEC 2016. (15/08003-4, 15/18942-8, 11/50761-2)

FREITAS, ANDERSON M.; TORRES, RICARDO DA S.; MIRANDA, PAULO A. V.. TSS & TSB: Tensor scale descriptors within circular sectors for fast shape retrieval. PATTERN RECOGNITION LETTERS, v. 83, p. 9-pg., 2016-11-01. (11/50761-2)

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JACOMINI, RICARDO DE SOUZA; MARTINS, JR., DAVID CORREA; DA SILVA, FELIPE LENO; REALI COSTA, ANNA HELENA. GeNICE: A Novel Framework for Gene Network Inference by Clustering, Exhaustive Search, and Multivariate Analysis. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 24, n. 8, p. 809-830, AUG 2017. (16/21047-3, 11/50761-2, 15/16310-4, 15/01587-0)

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AZEVEDO, HATYLAS; RENESTO, PAULO GUILHERME; CHINEN, ROGERIO; NAKA, ERIKA; CARVALHO DE MATOS, ANA CRISTINA; CENEDEZE, MARCOS ANTONIO; MOREIRA-FILHO, CARLOS ALBERTO; SARAIVA CAMARA, NIELS OLSEN; PACHECO-SILVA, ALVARO. Intragraft transcriptional profiling of renal transplant patients with tubular dysfunction reveals mechanisms underlying graft injury and recovery. HUMAN GENOMICS, v. 10, JAN 7 2016. (11/50761-2, 12/02270-2, 09/53443-1)

SILVA, FILIPI N.; COMIN, CESAR H.; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; YE, CHENG; WILSON, RICHARD C.; HANCOCK, EDWIN R.; COSTA, LUCIANO DA F.. Concentric network symmetry. INFORMATION SCIENCES, v. 333, p. 61-80, MAR 10 2016. (13/26416-9, 11/22639-8, 12/22160-7, 12/50986-7, 11/50761-2)

MATUSZEWSKI, DAMIAN J.; CESAR, JR., ROBERTO M.; STRICKLER, J. RUDI; BALDASSO, LUIS F.; LOPES, RUBENS M.. Visual rhythm for particle analysis in sample-in-flow systems: Application for continuous plankton monitoring. LIMNOLOGY AND OCEANOGRAPHY-METHODS, v. 13, n. 12, p. 687-696, DEC 2015. (11/50761-2)

LIMA, WANIA REZENDE; MARTINS, DAVID CORREA; PARREIRA, KLEBER SIMONIO; SCARPELLI, PEDRO; DE MORAES, MIRIAM SANTOS; TOPALIS, PANTELIS; HASHIMOTO, RONALDO FUMIO; GARCIA, CELIA R. S.. Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif. ONCOTARGET, v. 8, n. 69, p. 113987-114001, DEC 26 2017. (15/01587-0, 11/51295-5, 11/50761-2)

SATO, JOAO RICARDO; BALARDIN, JOANA; VIDAL, MACIEL CALEBE; FUJITA, ANDRE. Identification of segregated regions in the functional brain connectome of autistic patients by a combination of fuzzy spectral clustering and entropy analysis. JOURNAL OF PSYCHIATRY & NEUROSCIENCE, v. 41, n. 2, p. 124-132, MAR 2016. (14/09576-5, 11/50761-2)

DE ARRUDA, HENRIQUE F.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Using complex networks for text classification: Discriminating informative and imaginative documents. EPL, v. 113, n. 2, JAN 2016. (14/20830-0, 12/50986-7, 11/50761-2)

CRISTINO, A. S.; WILLIAMS, S. M.; HAWI, Z.; AN, J-Y; BELLGROVE, M. A.; SCHWARTZ, C. E.; COSTA, L. DA F.; CLAUDIANOS, C.. Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system. MOLECULAR PSYCHIATRY, v. 19, n. 3, p. 294-301, MAR 2014. (11/50761-2)

DIAS PEDRO, RICARDO WANDRE; NUNES, FATIMA L. S.; MACHADO-LIMA, ARIANE. Using Grammars for Pattern Recognition in Images: A Systematic Review. ACM COMPUTING SURVEYS, v. 46, n. 2, NOV 2013. (11/50761-2, 10/15691-0)

AMANCIO, DIEGO R.; ALTMANN, EDUARDO G.; RYBSKI, DIEGO; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. Probing the Statistical Properties of Unknown Texts: Application to the Voynich Manuscript. PLoS One, v. 8, n. 7, JUL 2 2013. (11/50761-2, 10/00927-9)

MANSILLA, LUCY A. C.; MIRANDA, PAULO A. V.; IEEE. Oriented Image Foresting Transform Segmentation: Connectivity Constraints with Adjustable Width. 2016 29TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., 2016-01-01. (11/50761-2)

CASTANEDA LEON, LEISSI M.; MIRANDA, PAULO A. V.; IEEE. Multi-Object Segmentation by Hierarchical Layered Oriented Image Foresting Transform. 2017 30TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., 2017-01-01. (14/50937-1, 16/21591-5, 11/50761-2)

SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 15-pg., 2019-08-01. (18/09125-4, 15/22308-2, 17/09280-7, 13/07375-0, 15/18942-8, 11/50761-2, 15/08003-4)

DIAS PEDRO, RICARDO WANDRE; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Towards an approach using grammars for automatic classification of masses in mammograms. COMPUTATIONAL INTELLIGENCE, v. 37, n. 4, SI, p. 1515-1544, NOV 2021. (11/50761-2)

OLIVEIRA, JESSICA S.; FRANCO, FELIPE O.; REVERS, MIRIAN C.; SILVA, ANDREIA F.; PORTOLESE, JOANA; BRENTANI, HELENA; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Computer-aided autism diagnosis based on visual attention models using eye tracking. SCIENTIFIC REPORTS, v. 11, n. 1, MAY 12 2021. (11/50761-2, 14/50889-7, 20/01992-0)

BEJAR, HANS H. C.; CAPPABIANCO, FABIO A. M.; MIRANDA, PAULO A. V.; BATTIATO, S; GALLO, G; SCHETTINI, R; STANCO, F. Efficient Image Segmentation in Graphs with Localized Curvilinear Features. IMAGE ANALYSIS AND PROCESSING,(ICIAP 2017), PT I, v. 10484, p. 11-pg., 2017-01-01. (16/21591-5, 11/50761-2, 14/12236-1)

MOREIRA TAVARES, ANDERSON CARLOS; VECHIATTO MIRANDA, PAULO ANDRE; SPINA, THIAGO VALLIN; FALCAO, ALEXANDRE XAVIER; ANGULO, J; VELASCOFORERO, S; MEYER, F. A Supervoxel-Based Solution to Resume Segmentation for Interactive Correction by Differential Image-Foresting Transforms. MATHEMATICAL MORPHOLOGY AND ITS APPLICATIONS TO SIGNAL AND IMAGE PROCESSING (ISMM 2017), v. 10225, p. 12-pg., 2017-01-01. (16/11853-2, 15/09446-7, 11/50761-2, 14/12236-1)

CONDORI, MARCOS A. T.; CAPPABIANCO, FABIO A. M.; FALCAO, ALEXANDRE X.; MIRANDA, PAULO A. V.; IEEE. Extending the Differential Image Foresting Transform to Root-based Path-cost Functions with Application to Superpixel Segmentation. 2017 30TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., 2017-01-01. (16/21591-5, 11/50761-2)

CCACYAHUILLCA BEJAR, HANS HARLEY; MIRANDA, PAULO AV. Oriented relative fuzzy connectedness: theory, algorithms, and its applications in hybrid image segmentation methods. EURASIP JOURNAL ON IMAGE AND VIDEO PROCESSING, v. N/A, p. 15-pg., 2015-07-23. (11/50761-2)

TRAVIESO, G.; RUGGIERO, C. A.; BRUNO, O. M.; COSTA, L. DA F.. Predicting efficiency in master-slave grid computing systems. JOURNAL OF COMPLEX NETWORKS, v. 1, n. 1, p. 9-pg., 2013-06-01. (11/01523-1, 03/08269-7, 11/50761-2)

YE, CHENG; WILSON, RICHARD C.; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HANCOCK, EDWIN R.. Approximate von Neumann entropy for directed graphs. PHYSICAL REVIEW E, v. 89, n. 5, p. 12-pg., 2014-05-12. (11/22639-8, 11/50761-2, 12/50986-7)

HIRAMA, RODRIGO S.; PEDRO, RICARDO W. D.; GRACILIANO, VINICIUS S. K.; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.; PAIVA, AC; CONCI, A; BRAZ, G; ALMEIDA, JDS; FERNANDES, LAF. Evaluating the impact of polygonal representations on mass classification. PROCEEDINGS OF THE 2020 INTERNATIONAL CONFERENCE ON SYSTEMS, SIGNALS AND IMAGE PROCESSING (IWSSIP), 27TH EDITION, v. N/A, p. 6-pg., 2020-01-01. (11/50761-2)

MENDEZ-BERMUDEZ, J. A.; FERRAZ DE ARRUDA, GUILHERME; RODRIGUES, FRANCISCO A.; MORENO, YAMIR. Scaling properties of multilayer random networks. PHYSICAL REVIEW E, v. 96, n. 1, p. 8-pg., 2017-07-07. (11/50761-2, 13/26416-9, 12/25219-2)

AMANCIO, DIEGO R.; OLIVEIRA, OSVALDO N., JR.; COSTA, LUCIANO DA F.. A decaying factor accounts for contained activity in neuronal networks with no need of hierarchical or modular organization. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 12-pg., 2012-11-01. (10/00927-9, 11/50761-2)

SOUZA, GLAUCIA MENDES; VAN SLUYS, MARIE-ANNE; LEMBKE, CAROLINA GIMILIANI; LEE, HAYAN; MARGARIDO, GABRIEL RODRIGUES ALVES; HOTTA, CARLOS TAKESHI; GAIARSA, JONAS WEISSMANN; DINIZ, AUGUSTO LIMA; OLIVEIRA, MAURO DE MEDEIROS; FERREIRA, SAVIO DE SIQUEIRA; et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GIGASCIENCE, v. 8, n. 12, p. 18-pg., 2019-12-01. (14/50921-8, 17/02842-0, 08/52074-0, 15/22993-7, 08/52146-0, 13/18322-4, 12/51062-3, 13/07467-1, 17/02270-6, 11/50761-2, 13/23048-9, 16/06917-1, 15/15346-5, 16/17545-8)

MONTOYA CUBAS, CARLOS FERNANDO; MARTINS-JR, DAVID CORREA JR; SANTOS, CARLOS SILVA; BARRERA, JUNIOR. Linear grouping of predictor instances to infer gene networks. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, p. 17-pg., 2015-12-01. (11/50761-2)