Busca avançada
Ano de início
Entree
Conteúdo relacionado

Modelos e métodos de e-Science para ciências da vida e agrárias

Processo: 11/50761-2
Modalidade de apoio:Auxílio à Pesquisa - Temático
Data de Início da vigência: 01 de fevereiro de 2012
Data de Término da vigência: 30 de setembro de 2016
Área do conhecimento:Ciências Exatas e da Terra - Ciência da Computação
Acordo de Cooperação: CNPq - Pronex
Pesquisador responsável:Roberto Marcondes Cesar Junior
Beneficiário:Roberto Marcondes Cesar Junior
Instituição Sede: Instituto de Matemática e Estatística (IME). Universidade de São Paulo (USP). São Paulo , SP, Brasil
Pesquisadores principais:
Carlos Alberto Moreira Filho ; Claudia Maria Bauzer Medeiros ; Luciano da Fontoura Costa
Auxílio(s) vinculado(s):14/50769-1 - Hand tracking for occupational therapy, AP.R SPRINT
15/05953-1 - ISMM 2015 - 12th International Symposium on Mathematical Morphology, AR.EXT
14/50135-2 - Learning salient elements from videos using structural and temporal information, AP.R
 + mais auxílios vinculados 13/25918-0 - Visita do prof. Dr. Stéphane Canu ao IME-USP, AV.EXT
13/03535-2 - 11th International Symposium on Mathematical Morphology (ISMM 2013), AR.EXT
12/50986-7 - Graph spectra and complex network evolution, AP.R
12/08637-5 - Visita da Profa. Dr. Florence Tupin ao IME-USP, AV.EXT - menos auxílios vinculados
Bolsa(s) vinculada(s):16/13791-4 - Um arcabouço para análise e rastreamento de gestos de mão: casos com formas e movimentos não usuais, BP.DR
15/13430-9 - Enumerando histórias metabólicas multidimensionais: modelos e métodos, BP.PD
15/18942-8 - Associando Redes Complexas com Espaços Efetivos de Atributos, BP.PD
 + mais bolsas vinculadas 15/18117-7 - Método para amostragem de experiências e intervenção programada (ESPIM), BP.PD
15/08003-4 - Abordagem de redes complexas em e-Science e dados dinâmicos, BP.PD
15/07252-0 - Documentos interativos para coleta especializada de experiências do cotidiano: operações para autoria, compartilhamento e análise, BP.DR
15/11693-2 - Programa de atividades e justificativa para bolsa de treinamento técnico V: gerente dos projetos de software livre ligados ao projeto temático, BP.TT
14/24918-0 - Deep learning fracamente supervisionado para detecção de faces e atributos de pessoas, BP.DR
15/03475-5 - Olhando para a cidade: big data e visão computacional para análise de ambientes urbanos, BP.IC
14/06549-7 - Programa de atividades e justificativa para bolsa de treinamento técnico V: gerente dos projetos de software livre ligados ao projeto temático, BP.TT
13/00613-2 - Modelos e métodos de e-Science para ciências da vida e agrárias, BP.TT
12/19164-0 - Proposta de uma metodologia quantitativa de análise do jogo em esportes coletivos de invasão baseada em um modelo formal de estratégia: aplicação ao basquetebol e ao futebol, BP.PD
12/16072-8 - Gerente dos projetos de software livre ligados ao projeto temático, BP.TT - menos bolsas vinculadas
Assunto(s):Banco de dados  Biologia computacional  Mineração de dados  Reconhecimento de padrões 
Palavra(s)-Chave do Pesquisador:Bancos De Dados | Bioinformatica | Biologia De Sistemas | Escience | Mineracao De Dados | Reconhecimento De Padroes

Resumo

A ciência moderna é crescentemente interdisciplinar e intensiva em dados. Na área de ciências da vida, por exemplo, com o surgimento de plataformas de alto desempenho para análise de imagens e estudos genômicos, o gargalo não está mais na aquisição de dados, mas sim no seu armazenamento, processamento, análise e visualização. Este cenário levou ao surgimento de um novo campo de pesquisa - eScience - que combina pesquisa avançada em computação e em modelagem matemática para permitir e acelerar pesquisa em outros domínios do conhecimento, desde as ciências exatas até as humanidades e artes. A eScience envolve a chamada "computação centrada em dados" (data-intensive computing), com a busca de soluções para gerenciamento de grandes volumes de dados produzidos por (e para) experimentos científicos, para que a descoberta científica não venha a ser detida pelo "dilúvio de dados". Este projeto visa a criação de uma rede colaborativa de eScience para acelerar pesquisa avançada em ciências da vida (biologia, medicina, oceanografia) e ciências agrárias. Está estruturado em tomo de cinco linhas de pesquisa - biologia de sistemas, planejamento de safras, computação visual, modelagem matemática e bancos de dados. Dentro dessas linhas, serão tratadas questões em aberto associadas às principais componentes de um ambiente de pesquisa em eScience: armazenamento, processamento, análise e visualização de grandes volumes de dados científicos. Os pesquisadores principais têm histórico de cooperação e coordenação de projetos nessas linhas. Questões de interoperalidade permeiam todo o projeto. (AU)

Matéria(s) publicada(s) na Agência FAPESP sobre o auxílio:
Mais itensMenos itens
Matéria(s) publicada(s) em Outras Mídias ( ):
Mais itensMenos itens
VEICULO: TITULO (DATA)
VEICULO: TITULO (DATA)

Publicações científicas (148)
(Referências obtidas automaticamente do Web of Science e do SciELO, por meio da informação sobre o financiamento pela FAPESP e o número do processo correspondente, incluída na publicação pelos autores)
YE, CHENG; WILSON, RICHARD C.; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HANCOCK, EDWIN R.. Approximate von Neumann entropy for directed graphs. Physical Review E, v. 89, n. 5, . (12/50986-7, 11/50761-2, 11/22639-8)
MACEDO, MAYSA M. G.; GUIMARAES, WELINGSON V. N.; GALON, MICHELI Z.; TAKIMURA, CELSO K.; LEMOS, PEDRO A.; GUTIERREZ, MARCO ANTONIO. A bifurcation identifier for IV-OCT using orthogonal least squares and supervised machine learning. Computerized Medical Imaging and Graphics, v. 46, n. 2, SI, p. 237-248, . (13/09922-8, 11/50761-2)
SIMOES, SERGIO N.; MARTINS, JR., DAVID C.; PEREIRA, CARLOS A. B.; HASHIMOTO, RONALDO F.; BRENTANI, HELENA. NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. BMC Bioinformatics, v. 16, n. 19, . (11/50761-2, 10/52138-8)
EROGLU, DENIZ; PERON, THOMAS K. D. M.; MARWAN, NOBERT; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; SEBEK, MICHAEL; KISS, ISTVAN Z.; KURTHS, JUERGEN. Entropy of weighted recurrence plots. Physical Review E, v. 90, n. 4, . (12/22160-7, 13/26416-9, 11/50761-2)
DE ARRUDA, GUILHERME FERRAZ; BARBIERI, ANDRE LUIZ; RODRIGUEZ, PABLO MARTIN; RODRIGUES, FRANCISCO A.; MORENO, YAMIR; COSTA, LUCIANO DA FONTOURA. Role of centrality for the identification of influential spreaders in complex networks. Physical Review E, v. 90, n. 3, . (13/26416-9, 13/03898-8, 11/50761-2)
AMANCIO, DIEGO R.; OLIVEIRA, JR., OSVALDO N.; COSTA, L. DA F.. Robustness of community structure to node removal. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (14/20830-0, 11/50761-2, 13/06717-4)
DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR JR, ROBERTO M.. Scalable object instance recognition based on keygraph matching. PATTERN RECOGNITION LETTERS, v. 114, n. SI, p. 53-62, . (14/50769-1, 15/22308-2, 11/50761-2)
SWARNKAR, TRIPTI; SIMOES, SERGIO NERY; ANURA, ANJI; BRENTANI, HELENA; CHATTERJEE, JYOTIRMOY; HASHIMOTO, RONALDO FUMIO; MARTINS, DAVID CORREA; MITRA, PABITRA. Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, . (11/50761-2, 10/52138-8)
SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (15/22308-2, 15/08003-4, 17/09280-7, 15/18942-8, 13/07375-0, 18/09125-4, 11/50761-2)
DOMINGUES, G. S.; SILVA, F. N.; COMIN, C. H.; COSTA, L. DA F.. Topological characterization of world cities. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (17/09280-7, 15/22308-2, 11/50761-2, 15/18942-8, 15/08003-4)
COMIN, CESAR HENRIQUE; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA. A diffusion-based approach to obtaining the borders of urban areas. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (11/22639-8, 11/50761-2)
DIAS PEDRO, RICARDO WANDRE; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Towards an approach using grammars for automatic classification of masses in mammograms. COMPUTATIONAL INTELLIGENCE, . (11/50761-2)
YE, CHENG; COMIN, CESAR H.; PERON, THOMAS K. D. M.; SILVA, FILIPI N.; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; TORSELLO, ANDREA; HANCOCK, EDWIN R.. Thermodynamic characterization of networks using graph polynomials. Physical Review E, v. 92, n. 3, . (13/26416-9, 11/22639-8, 12/22160-7, 12/50986-7, 11/50761-2)
OLIVEIRA, MAURO DE MEDEIROS; BONADIO, IGOR; DE MELO, ALICIA LIE; SOUZA, GLAUCIA MENDES; DURHAM, ALAN MITCHELL. TSSFinder-fast and accurate ab initio prediction of the core promoter in eukaryotic genomes. BRIEFINGS IN BIOINFORMATICS, v. 22, n. 6, . (11/50761-2, 14/50921-8)
BANDO, SILVIA Y.; IAMASHITA, PRISCILA; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; ABE, CECILIA M.; BERTONHA, FERNANDA B.; GUTH, BEATRIZ E. C.; FUJITA, ANDRE; MOREIRA-FILHO, CARLOS A.. Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic-Uremic Syndrome. MICROORGANISMS, v. 7, n. 7, . (15/22308-2, 11/50761-2)
GEWERS, FELIPE L.; FERREIRA, GUSTAVO R.; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Principal Component Analysis: A Natural Approach to Data Exploration. ACM COMPUTING SURVEYS, v. 54, n. 4, . (17/13464-6, 18/09125-4, 15/22308-2, 16/19069-9, 18/10489-0, 11/50761-2, 19/16223-5)
FELTRIN, ARTHUR SANT'ANNA; TAHIRA, ANA CAROLINA; SIMOES, SERGIO NERY; BRENTANI, HELENA; MARTINS, JR., DAVID CORREA. Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders. PLoS One, v. 14, n. 1, . (11/04956-6, 11/50761-2, 14/00041-1, 14/10488-3, 15/01587-0)
DE ARRUDA, HENRIQUE FERRAZ; SILVA, FILIPI NASCIMENTO; MARINHO, VANESSA QUEIROZ; AMANCIO, DIEGO RAPHAEL; COSTA, LUCIANO DA FONTOURA. Representation of texts as complex networks: a mesoscopic approach. JOURNAL OF COMPLEX NETWORKS, v. 6, n. 1, p. 125-144, . (16/19069-9, 11/50761-2, 15/05676-8, 14/20830-0, 15/08003-4)
DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Knowledge acquisition: A Complex networks approach. INFORMATION SCIENCES, v. 421, p. 154-166, . (14/20830-0, 16/19069-9, 11/50761-2, 15/08003-4)
SANTOS, SUZANA DE SIQUEIRA; DE ALMEIDA GALATRO, THAIS FERNANDA; WATANABE, RODRIGO AKIRA; OBA-SHINJO, SUELI MIEKO; NAGAHASHI MARIE, SUELY KAZUE; FUJITA, ANDRE. CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra. PLoS One, v. 10, n. 8, . (14/09576-5, 12/25417-9, 11/50761-2, 13/03447-6)
MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; BERTONHA, FERNANDA BERNARDI; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; FERREIRA, LEANDRO RODRIGUES; FURLANETTO, GLAUCIO; CHACUR, PAULO; NOGUEIRA ZERBINI, MARIA CLAUDIA; CARNEIRO-SAMPAIO, MAGDA. Modular transcriptional repertoire and MicroRNA target analyses characterize genomic dysregulation in the thymus of Down syndrome infants. ONCOTARGET, v. 7, n. 7, p. 7497-7533, . (08/58238-4, 14/50489-9, 05/00587-5, 11/50761-2, 09/53443-1)
DE ARRUDA, HENRIQUE FERRAZ; COMIN, CESAR HENRIQUE; MIAZAKI, MAURO; VIANA, MATHEUS PALHARES; COSTA, LUCIANO DA FONTOURA. A framework for analyzing the relationship between gene expression and morphological, topological, and dynamical patterns in neuronal networks. JOURNAL OF NEUROSCIENCE METHODS, v. 245, p. 1-14, . (07/50988-1, 11/50761-2, 11/22639-8)
MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; BERTONHA, FERNANDA BERNARDI; IAMASHITA, PRISCILA; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; SILVA, ALEXANDRE VALOTTA; MARTINS CASTRO, LUIZ HENRIQUE; WEN, HUNG-TZU. Community Structure Analysis of Transcriptional Networks Reveals Distinct Molecular Pathways for Early- and Late-Onset Temporal Lobe Epilepsy with Childhood Febrile Seizures. PLoS One, v. 10, n. 5, . (05/56446-0, 05/00587-5, 11/50761-2, 09/53443-1)
DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Connecting network science and information theory. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 515, p. 641-648, . (15/18942-8, 16/19069-9, 14/20830-0, 15/08003-4, 11/50761-2)
DE ARRUDA, GUILHERME FERRAZ; LEBENSZTAYN, ELCIO; RODRIGUES, FRANCISCO A.; RODRIGUEZ, PABLO MARTIN. A process of rumour scotching on finite populations. ROYAL SOCIETY OPEN SCIENCE, v. 2, n. 9, . (13/26416-9, 12/25219-2, 13/03898-8, 11/50761-2, 12/22673-4)
CORREA, DEBORA C.; AP RODRIGUES, FRANCISCO. A survey on symbolic data-based music genre classification. EXPERT SYSTEMS WITH APPLICATIONS, v. 60, p. 190-210, . (11/50761-2, 13/26416-9, 12/17961-0)
DE ARRUDA, HENRIQUE F.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Topic segmentation via community detection in complex networks. Chaos, v. 26, n. 6, . (14/20830-0, 11/50761-2)
LACOSTE, BAPTISTE; COMIN, CESAR H.; BEN-ZVI, AYAL; KAESER, PASCAL S.; XU, XIAOYIN; COSTA, LUCIANO DA F.; GU, CHENGHUA. Sensory-Related Neural Activity Regulates the Structure of Vascular Networks in the Cerebral Cortex. NEURON, v. 83, n. 5, p. 1117-1130, . (11/22639-8, 11/50761-2)
COMIN, CESAR H.; SANTOS, JOAO R.; CORRADINI, DARIO; MORRISON, WILL; CURME, CHESTER; ROSENE, DOUGLAS L.; GABRIELLI, ANDREA; COSTA, LUCIANO DA F.; STANLEY, H. EUGENE. Statistical physics approach to quantifying differences in myelinated nerve fibers. SCIENTIFIC REPORTS, v. 4, . (11/22639-8, 11/50761-2)
MIRANDA, PAULO A. V.; MANSILLA, LUCY A. C.. Oriented Image Foresting Transform Segmentation by Seed Competition. IEEE Transactions on Image Processing, v. 23, n. 1, p. 389-398, . (11/50761-2, 12/06911-2)
LOPES, FABRICIO M.; RAY, SHUBHRA SANKAR; HASHIMOTO, RONALDO F.; CESAR, JR., ROBERTO M.. Entropic Biological Score: a cell cycle investigation for GRNs inference. Gene, v. 541, n. 2, p. 129-137, . (11/50761-2, 10/52138-8)
JI, PENG; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; KURTHS, JUERGEN. Low-dimensional behavior of Kuramoto model with inertia in complex networks. SCIENTIFIC REPORTS, v. 4, . (13/26416-9, 11/50761-2)
AMANCIO, DIEGO RAPHAEL; COMIN, CESAR HENRIQUE; CASANOVA, DALCIMAR; TRAVIESO, GONZALO; BRUNO, ODEMIR MARTINEZ; RODRIGUES, FRANCISCO APARECIDO; COSTA, LUCIANO DA FONTOURA. A Systematic Comparison of Supervised Classifiers. PLoS One, v. 9, n. 4, . (13/06717-4, 10/00927-9, 11/22639-8, 13/14984-2, 10/19440-2, 14/04930-5, 11/50761-2)
LOPES, FABRICIO M.; MARTINS, JR., DAVID C.; BARRERA, JUNIOR; CESAR, JR., ROBERTO M.. A feature selection technique for inference of graphs from their known topological properties: Revealing scale-free gene regulatory networks. INFORMATION SCIENCES, v. 272, p. 1-15, . (11/50761-2)
AMANCIO, DIEGO R.; ALUISIO, SANDRA M.; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. Complex networks analysis of language complexity. EPL, v. 100, n. 5, . (11/50761-2, 10/00927-9)
AMANCIO, DIEGO RAPHAEL; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA FONTOURA. Identification of literary movements using complex networks to represent texts. NEW JOURNAL OF PHYSICS, v. 14, . (11/50761-2, 10/00927-9)
BANDO, SILVIA YUMI; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; SILVA, ALEXANDRE V.; PIMENTEL-SILVA, LUCIANA R.; CASTRO, LUIZ H. M.; WEN, HUNG-TZU; AMARO, JR., EDSON; MOREIRA-FILHO, CARLOS ALBERTO. Complex Network Analysis of CA3 Transcriptome Reveals Pathogenic and Compensatory Pathways in Refractory Temporal Lobe Epilepsy. PLoS One, v. 8, n. 11, . (05/56446-0, 05/00587-5, 11/50761-2, 09/53443-1)
COMIN, CESAR H.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.. A framework for evaluating complex networks measurements. EPL, v. 110, n. 6, . (11/22639-8, 11/50761-2)
MIAZAKI, MAURO; VIANA, MATHEUS P.; YANG, ZHONG; COMIN, CESAR H.; WANG, YAMING; COSTA, LUCIANO DA F.; XU, XIAOYIN. Automated high-content morphological analysis of muscle fiber histology. COMPUTERS IN BIOLOGY AND MEDICINE, v. 63, p. 28-35, . (07/50988-1, 11/50761-2, 11/22639-8)
PINTO, SILVIA C. D.; URBANOVA, PETRA; CESAR, JR., ROBERTO M.. Two-Dimensional Wavelet Analysis of Supraorbital Margins of the Human Skull for Characterizing Sexual Dimorphism. IEEE Transactions on Information Forensics and Security, v. 11, n. 7, p. 1542-1548, . (11/50761-2)
COSTA, LUCIANO DA F.; SILVA, FILIPI NASCIMENTO; COMIN, CESAR H.. Characterizing BJTs using the Early voltage in the forward active mode. INTERNATIONAL JOURNAL OF CIRCUIT THEORY AND APPLICATIONS, v. 46, n. 4, p. 978-986, . (15/18942-8, 15/08003-4, 11/50761-2)
AZEVEDO, HATYLAS; KHALED, NATHALIA AMATO; SANTOS, PAULA; BERTONHA, FERNANDA BERNARDI; MOREIRA-FILHO, CARLOS ALBERTO. Temporal analysis of hippocampal CA3 gene coexpression networks in a rat model of febrile seizures. Disease Models & Mechanisms, v. 11, n. 1, . (11/50761-2)
CORREA, JR., EDILSON A.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Patterns of authors contribution in scientific manuscripts. Journal of Informetrics, v. 11, n. 2, p. 498-510, . (14/20830-0, 16/19069-9, 11/50761-2, 15/08003-4)
DE ARRUDA, HENRIQUE F.; MARINHO, VANESSA Q.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Paragraph-based representation of texts: A complex networks approach. INFORMATION PROCESSING & MANAGEMENT, v. 56, n. 3, p. 479-494, . (17/13464-6, 15/22308-2, 16/19069-9, 11/50761-2, 15/05676-8)
BURKE, PAULO E. P.; COMIN, CESAR H.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.. Biological network border detection. INTEGRATIVE BIOLOGY, v. 9, n. 12, p. 947-955, . (15/18942-8, 11/50761-2, 15/08003-4)
GOUVEIA, AYDEN; SEEGOBIN, MATTHEW; KANNANGARA, TIMAL S.; HE, LING; WONDISFORD, FREDRIC; COMIN, CESAR H.; COSTA, LUCIANO DA F.; BEIQUE, JEAN-CLAUDE; LAGACE, DIANE C.; LACOSTE, BAPTISTE; et al. The aPKC-CBP Pathway Regulates Post-stroke Neurovascular Remodeling and Functional Recovery. STEM CELL REPORTS, v. 9, n. 6, p. 1735-1744, . (11/50761-2, 15/18942-8)
COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H.. A pattern recognition approach to transistor array parameter variance. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 499, p. 176-185, . (15/18942-8, 15/22308-2, 15/08003-4, 11/50761-2)
DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR-, ROBERTO M., JR.; IEEE. Efficient object recognition using sampling of keypoint triples and keygraph structure. 2016 29TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (14/50769-1, 11/50761-2)
MORIMITSU, HENRIQUE; BLOCH, ISABELLE; CESAR-, ROBERTO M., JR.. Exploring structure for long-term tracking of multiple objects in sports videos. COMPUTER VISION AND IMAGE UNDERSTANDING, v. 159, p. 16-pg., . (14/50135-2, 11/50761-2, 13/08258-7, 12/09741-0)
MOREIRA TAVARES, ANDERSON CARLOS; CCACYAHUILLCA BEJAR, HANS HARLEY; VECHIATTO MIRANDA, PAULO ANDRE; ANGULO, J; VELASCOFORERO, S; MEYER, F. Seed Robustness of Oriented Image Foresting Transform: Core Computation and the Robustness Coefficient. MATHEMATICAL MORPHOLOGY AND ITS APPLICATIONS TO SIGNAL AND IMAGE PROCESSING (ISMM 2017), v. 10225, p. 12-pg., . (14/12236-1, 11/50761-2)
BANDO, SILVIA YUMI; IAMASHITA, PRISCILA; GUTH, BEATRIZ E.; DOS SANTOS, LUIS F.; FUJITA, ANDRE; ABE, CECILIA M.; FERREIRA, LEANDRO R.; MOREIRA-FILHO, CARLOS ALBERTO. A hemolytic-uremic syndrome-associated strain O113:H21 Shiga toxin-producing Escherichia coli specifically expresses a transcriptional module containing dicA and is related to gene network dysregulation in Caco-2 cells. PLoS One, v. 12, n. 12, . (11/50761-2, 15/22308-2)
SOUZA, PAULO J. P.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Topology and dynamics in complex networks: The role of edge reciprocity. EPL, v. 122, n. 2, . (11/50761-2, 15/22308-2, 15/18942-8)
PERCIANO, T.; TUPIN, F.; HIRATA, JR., R.; CESAR, JR., R. M.. A two-level Markov random field for road network extraction and its application with optical, SAR, and multitemporal data. International Journal of Remote Sensing, v. 37, n. 16, p. 3584-3610, . (11/50761-2)
SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Seeking maximum linearity of transfer functions. Review of Scientific Instruments, v. 87, n. 12, . (15/08003-4, 15/18942-8, 11/50761-2)
FREITAS, ANDERSON M.; TORRES, RICARDO DA S.; MIRANDA, PAULO A. V.. TSS & TSB: Tensor scale descriptors within circular sectors for fast shape retrieval. PATTERN RECOGNITION LETTERS, v. 83, p. 9-pg., . (11/50761-2)
CONDORI, MARCOS A. T.; MANSILLA, LUCY A. C.; MIRANDA, PAULO A. V.; ANGULO, J; VELASCOFORERO, S; MEYER, F. Bandeirantes: A Graph-Based Approach for Curve Tracing and Boundary Tracking. MATHEMATICAL MORPHOLOGY AND ITS APPLICATIONS TO SIGNAL AND IMAGE PROCESSING (ISMM 2017), v. 10225, p. 12-pg., . (14/12236-1, 11/50761-2)
DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR JR, ROBERTO M.. Scalable object instance recognition based on keygraph matching. PATTERN RECOGNITION LETTERS, v. 114, p. 10-pg., . (14/50769-1, 11/50761-2, 15/22308-2)
OUELLETTE, JULIE; TOUSSAY, XAVIER; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HO, MIRABELLE; LACALLE-AURIOLES, MARIA; FREITAS-ANDRADE, MOISES; LIU, QING YAN; LECLERC, SONIA; PAN, YOULIAN; et al. Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice. NATURE NEUROSCIENCE, v. 23, n. 9, . (15/18942-8, 15/22308-2, 11/50761-2)
CERIBELI, CAROLINE; FERRAZ DE ARRUDA, HENRIQUE; DA FONTOURA COSTA, LUCIANO. How coupled are capillary electrophoresis and mass spectrometry?. SCIENTOMETRICS, v. 126, n. 5, p. 3841-3851, . (13/07375-0, 15/22308-2, 19/16223-5, 18/10489-0, 11/50761-2)
CONDORI, MARCOS A. T.; CAPPABIANCO, FABIO A. M.; FALCAO, ALEXANDRE X.; MIRANDA, PAULO A., V. An extension of the differential image foresting transform and its application to superpixel generation. JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION, v. 71, p. 15-pg., . (16/21591-5, 14/12236-1, 11/50761-2, 14/50937-1)
VEGA-OLIVEROS, DIDIER A.; COSTA, LUCIANO DA F.; RODRIGUES, FRANCISCO A.. Rumor propagation with heterogeneous transmission in social networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 21-pg., . (11/50761-2, 13/26416-9)
CERVANTES, EVELYN PEREZ; COMIN, CESAR HENRIQUE; CESAR JUNIOR, ROBERTO MARCONDES; COSTA, LUCIANO DA FONTOURA; IEEE. Data-oriented neuron classification from their parts. PROCEEDINGS OF THE 2016 IEEE 12TH INTERNATIONAL CONFERENCE ON E-SCIENCE (E-SCIENCE), v. N/A, p. 8-pg., . (11/50761-2, 15/18942-8, 15/01587-0)
TAVARES, ANDERSON C. M.; BEJAR, HANS H. C.; MIRANDA, PAULO A. V.; STYNER, MA; ANGELINI, ED. Seed Robustness of Oriented Relative Fuzzy Connectedness: Core Computation and its Applications. MEDICAL IMAGING 2017: IMAGE PROCESSING, v. 10133, p. 10-pg., . (11/50761-2)
COMIN, CESAR H.; VIANA, MATHEUS P.; HENNING, BARBARA; DOS SANTOS, THAIS M. P.; LOPES, RICARDO T.; DOS REIS, SERGIO F.; COSTA, LUCIANO DA F.; IEEE. CHARACTERIZING THE TRABECULAR BONE TISSUE OF THE TOCO TOUCAN BILL. 2018 25TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP), v. N/A, p. 5-pg., . (11/50761-2, 15/18942-8, 15/22308-2)
DOMINGUES, G. S.; SILVA, F. N.; COMIN, C. H.; COSTA, L. DA F.. Topological characterization of world cities. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 18-pg., . (17/09280-7, 15/18942-8, 15/08003-4, 11/50761-2, 15/22308-2)
YE, CHENG; COMIN, CESAR H.; PERON, THOMAS K. D. M.; SILVA, FILIPI N.; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; TORSELLO, ANDREA; HANCOCK, EDWIN R.. Thermodynamic characterization of networks using graph polynomials. PHYSICAL REVIEW E, v. 92, n. 3, p. 16-pg., . (13/26416-9, 12/50986-7, 11/22639-8, 11/50761-2, 11/50761-2, 12/22160-7)
JIMENEZ, RAY DUENAS; MARTINS-JR, DAVID CORREA JR; SANTOS, CARLOS SILVA. One genetic algorithm per gene to infer gene networks from expression data. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, p. 22-pg., . (14/21050-9, 11/50761-2)
SWARNKAR, TRIPTI; SIMOES, SERGIO NERY; ANURA, ANJI; BRENTANI, HELENA; CHATTERJEE, JYOTIRMOY; HASHIMOTO, RONALDO FUMIO; MARTINS, DAVID CORREA; MITRA, PABITRA. Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, p. 18-pg., . (11/50761-2, 10/52138-8)
MACEDO, MAYSA M. G.; GUIMARAES, WELINGSON V. N.; GALON, MICHELI Z.; TAKIMURA, CELSO K.; LEMOS, PEDRO A.; GUTIERREZ, MARCO ANTONIO. A bifurcation identifier for IV-OCT using orthogonal least squares and supervised machine learning. Computerized Medical Imaging and Graphics, v. 46, p. 12-pg., . (13/09922-8, 11/50761-2)
SIMOES, SERGIO N.; MARTINS, DAVID C., JR.; PEREIRA, CARLOS A. B.; HASHIMOTO, RONALDO F.; BRENTANI, HELENA. NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. BMC Bioinformatics, v. 16, p. 14-pg., . (10/52138-8, 11/50761-2)
BARBOSA, SAMUEL; COSLEY, DAN; SHARMA, AMIT; CESAR, ROBERTO M., JR.; ACM. Averaging Gone Wrong: Using Time-Aware Analyses to Better Understand Behavior. PROCEEDINGS OF THE 25TH INTERNATIONAL CONFERENCE ON WORLD WIDE WEB (WWW'16), v. N/A, p. 13-pg., . (11/50761-2)
DE ARRUDA, HENRIQUE FERRAZ; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Minimal paths between communities induced by geographical networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 16-pg., . (11/22639-8, 11/50761-2)
COMIN, CESAR HENRIQUE; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA. A diffusion-based approach to obtaining the borders of urban areas. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 12-pg., . (11/22639-8, 11/50761-2)
DE ARRUDA, GUILHERME FERRAZ; BARBIERI, ANDRE LUIZ; RODRIGUEZ, PABLO MARTIN; RODRIGUES, FRANCISCO A.; MORENO, YAMIR; COSTA, LUCIANO DA FONTOURA. Role of centrality for the identification of influential spreaders in complex networks. PHYSICAL REVIEW E, v. 90, n. 3, p. 17-pg., . (13/03898-8, 11/50761-2, 13/26416-9)
EROGLU, DENIZ; PERON, THOMAS K. D. M.; MARWAN, NOBERT; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; SEBEK, MICHAEL; KISS, ISTVAN Z.; KURTHS, JUERGEN. Entropy of weighted recurrence plots. Physical Review E, v. 90, n. 4, p. 7-pg., . (11/50761-2, 13/26416-9, 12/22160-7)
JI, PENG; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; KURTHS, JUEURGEN. Analysis of cluster explosive synchronization in complex networks. Physical Review E, v. 90, n. 6, p. 10-pg., . (11/50761-2, 13/26416-9, 12/22160-7)
COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Shape, connectedness and dynamics in neuronal networks. JOURNAL OF NEUROSCIENCE METHODS, v. 220, n. 2, p. 16-pg., . (11/50151-0, 11/50761-2, 11/22639-8)
AMANCIO, DIEGO R.; OLIVEIRA, OSVALDO N., JR.; COSTA, L. DA F.. Robustness of community structure to node removal. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 18-pg., . (13/06717-4, 14/20830-0, 11/50761-2)
MENDEZ-BERMUDEZ, J. A.; ALCAZAR-LOPEZ, A.; MARTINEZ-MENDOZA, A. J.; RODRIGUES, FRANCISCO A.; PERON, THOMAS K. D. M.. Universality in the spectral and eigenfunction properties of random networks. PHYSICAL REVIEW E, v. 91, n. 3, p. 10-pg., . (11/50761-2, 13/26416-9, 12/22160-7)
FREITAS, ANDERSON M.; TORRES, RICARDO DA S.; MIRANDA, PAULO A. V.. TSS & TSB: Tensor scale descriptors within circular sectors for fast shape retrieval. PATTERN RECOGNITION LETTERS, v. 83, n. 3, p. 303-311, . (11/50761-2)
CCACYAHUILLCA BEJAR, HANS HARLEY; MIRANDA, PAULO AV. Oriented relative fuzzy connectedness: theory, algorithms, and its applications in hybrid image segmentation methods. EURASIP JOURNAL ON IMAGE AND VIDEO PROCESSING, . (11/50761-2)
JIMENEZ, RAY DUENAS; MARTINS-JR, DAVID CORREA JR; SANTOS, CARLOS SILVA. One genetic algorithm per gene to infer gene networks from expression data. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, . (14/21050-9, 11/50761-2)
MONTOYA CUBAS, CARLOS FERNANDO; MARTINS-JR, DAVID CORREA JR; SANTOS, CARLOS SILVA; BARRERA, JUNIOR. Linear grouping of predictor instances to infer gene networks. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, . (11/50761-2)
VEGA-OLIVEROS, DIDIER A.; COSTA, LUCIANO DA F.; RODRIGUES, FRANCISCO A.. Rumor propagation with heterogeneous transmission in social networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (13/26416-9, 11/50761-2)
CERIBELI, CAROLINE; FERRAZ DE ARRUDA, HENRIQUE; DA FONTOURA COSTA, LUCIANO. How coupled are capillary electrophoresis and mass spectrometry?. SCIENTOMETRICS, . (15/22308-2, 13/07375-0, 11/50761-2, 18/10489-0, 19/16223-5)
DE ARRUDA, HENRIQUE FERRAZ; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Minimal paths between communities induced by geographical networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (11/22639-8, 11/50761-2)
SOUZA, GLAUCIA MENDES; VAN SLUYS, MARIE-ANNE; LEMBKE, CAROLINA GIMILIANI; LEE, HAYAN; MARGARIDO, GABRIEL RODRIGUES ALVES; HOTTA, CARLOS TAKESHI; GAIARSA, JONAS WEISSMANN; DINIZ, AUGUSTO LIMA; OLIVEIRA, MAURO DE MEDEIROS; FERREIRA, SAVIO DE SIQUEIRA; et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GIGASCIENCE, v. 8, n. 12, . (13/07467-1, 13/18322-4, 17/02842-0, 08/52074-0, 14/50921-8, 15/22993-7, 12/51062-3, 17/02270-6, 11/50761-2, 16/17545-8, 16/06917-1, 13/23048-9, 08/52146-0, 15/15346-5)
MENDEZ-BERMUDEZ, J. A.; FERRAZ DE ARRUDA, GUILHERME; RODRIGUES, FRANCISCO A.; MORENO, YAMIR. Scaling properties of multilayer random networks. Physical Review E, v. 96, n. 1, . (13/26416-9, 11/50761-2, 12/25219-2)
MENDEZ-BERMUDEZ, J. A.; ALCAZAR-LOPEZ, A.; MARTINEZ-MENDOZA, A. J.; RODRIGUES, FRANCISCO A.; PERON, THOMAS K. D. M.. Universality in the spectral and eigenfunction properties of random networks. Physical Review E, v. 91, n. 3, . (12/22160-7, 13/26416-9, 11/50761-2)
MORIMITSU, HENRIQUE; BLOCH, ISABELLE; CESAR-, JR., ROBERTO M.. Exploring structure for long-term tracking of multiple objects in sports videos. COMPUTER VISION AND IMAGE UNDERSTANDING, v. 159, n. SI, p. 89-104, . (14/50135-2, 13/08258-7, 12/09741-0, 11/50761-2)
JI, PENG; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; KURTHS, JUEURGEN. Analysis of cluster explosive synchronization in complex networks. Physical Review E, v. 90, n. 6, . (12/22160-7, 13/26416-9, 11/50761-2)
COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Shape, connectedness and dynamics in neuronal networks. JOURNAL OF NEUROSCIENCE METHODS, v. 220, n. 2, SI, p. 100-115, . (11/22639-8, 11/50761-2)
AMANCIO, DIEGO R.; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. A decaying factor accounts for contained activity in neuronal networks with no need of hierarchical or modular organization. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, . (11/50761-2, 10/00927-9)
RIBEIRO, ADELE H.; PAVAN SOLER, JULIA MARIA; HIRATA JR, ROBERTO. Variance-Preserving Estimation of Intensity Values Obtained From Omics Experiments. FRONTIERS IN GENETICS, v. 10, . (06/03227-2, 11/50761-2, 15/01587-0)
MONTAGNER, IGOR S.; HIRATA, NINA S. T.; HIRATA, ROBERTO, JR.; CANU, STEPHANE; IEEE. Kernel approximations for W-operator learning. 2016 29TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (11/50761-2, 15/01587-0, 11/23310-0, 14/21692-0, 15/17741-9)
DE ARRUDA, HENRIQUE FERRAZ; BENATTI, ALEXANDRE; SILVA, FILIPI NASCIMENTO; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Contrarian effects and echo chamber formation in opinion dynamics. JOURNAL OF PHYSICS-COMPLEXITY, v. 2, n. 1, p. 12-pg., . (19/16223-5, 15/22308-2, 18/10489-0, 11/50761-2, 18/09125-4)
VILLAR COUTO, CYNTHIA MARTINS; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Effects of threshold on the topology of gene co-expression networks. MOLECULAR BIOSYSTEMS, v. 13, n. 10, p. 2024-2035, . (13/19082-7, 11/50761-2, 15/18942-8)
MENDEZ-BERMUDEZ, J. A.; FERRAZ DE ARRUDA, GUILHERME; RODRIGUES, FRANCISCO A.; MORENO, YAMIR. Diluted banded random matrices: scaling behavior of eigenfunction and spectral properties. Journal of Physics A-Mathematical and Theoretical, v. 50, n. 49, . (13/26416-9, 15/07463-1, 11/50761-2, 12/25219-2)
DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. How integrated are theoretical and applied physics?. SCIENTOMETRICS, v. 116, n. 2, p. 1113-1121, . (15/18942-8, 15/22308-2, 11/50761-2)
DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Problem-solving using complex networks. European Physical Journal B, v. 92, n. 6, . (13/07375-0, 15/22308-2, 11/50761-2, 18/09125-4)
LIMA, THALES S.; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. The dynamics of knowledge acquisition via self-learning in complex networks. Chaos, v. 28, n. 8, . (17/13464-6, 17/09280-7, 15/22308-2, 16/19069-9, 11/50761-2, 15/08003-4, 15/18942-8)
DE ARRUDA, HENRIQUE F.; MARINHO, VANESSA Q.; LIMA, THALES S.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. An image analysis approach to text analytics based on complex networks. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 510, p. 110-120, . (16/19069-9, 11/50761-2, 15/22308-2, 15/05676-8)
REIS, MARCELO S.; ESTRELA, GUSTAVO; FERREIRA, CARLOS EDUARDO; BARRERA, JUNIOR. Optimal Boolean lattice-based algorithms for the U-curve optimization problem. INFORMATION SCIENCES, v. 471, p. 97-114, . (13/07467-1, 11/50761-2, 14/23564-0)
BENATTI, ALEXANDRE; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI NASCIMENTO; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Opinion diversity and social bubbles in adaptive Sznajd networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. 2020, n. 2, . (15/22308-2, 11/50761-2, 18/09125-4, 18/10489-0)
VEGA-OLIVEROS, DIDIER A.; COSTA, LUCIANO DA FONTOURA; RODRIGUES, FRANCISCO APARECIDO. Influence maximization by rumor spreading on correlated networks through community identification. COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION, v. 83, . (15/22308-2, 11/50761-2, 15/50122-0, 13/07375-0, 16/23698-1, 18/24260-5)
RODRIGUES, VALQUIRIA DA CRUZ; COMIN, CESAR H.; SOARES, JULIANA COATRINI; SOARES, ANDREY COATRINI; MELENDEZ, MATIAS ELISEO; FREGNANI, JOSE HUMBERTO T. G.; CARVALHO, ANDRE LOPES; COSTA, LUCIANO DA F.; OLIVEIRA, JR., OSVALDO N.. Analysis of Scanning Electron Microscopy Images To Investigate Adsorption Processes Responsible for Detection of Cancer Biomarkers. ACS APPLIED MATERIALS & INTERFACES, v. 9, n. 7, p. 5885-5890, . (11/22639-8, 13/14262-7, 11/50761-2, 15/18942-8)
PIMENTA, MAYRA Z.; COMIN, CESAR HENRIQUE; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; IEEE. The impact of Interconnecting Topologies on SOM Neural Networks. 2018 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN), v. N/A, p. 6-pg., . (15/18942-8, 11/50761-2, 15/22308-2)
COMIN, CESAR H.; TAYLOR, GAVIN J.; COSTA, LUCIANO DA F.. Quantifying the regularity of a 3D set of points on the surface of an ellipsoidal object. PATTERN RECOGNITION LETTERS, v. 133, p. 1-7, . (15/22308-2, 11/50761-2, 18/09125-4)
JACOMINI, RICARDO DE SOUZA; MARTINS, JR., DAVID CORREA; DA SILVA, FELIPE LENO; REALI COSTA, ANNA HELENA. GeNICE: A Novel Framework for Gene Network Inference by Clustering, Exhaustive Search, and Multivariate Analysis. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 24, n. 8, p. 809-830, . (16/21047-3, 11/50761-2, 15/16310-4, 15/01587-0)
COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H.. Negative feedback, linearity and parameter invariance in linear electronics. ELECTRICAL ENGINEERING, v. 100, n. 2, p. 1159-1181, . (15/18942-8, 11/50761-2, 15/08003-4)
RODRIGUEZ, MAYRA Z.; COMIN, CESAR H.; CASANOVA, DALCIMAR; BRUNO, ODEMIR M.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.; RODRIGUES, FRANCISCO A.. Clustering algorithms: A comparative approach. PLoS One, v. 14, n. 1, . (16/19069-9, 14/20830-0, 15/18942-8, 15/22308-2, 14/08026-1, 18/09125-4, 11/50761-2)
AMANCIO, DIEGO R.; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. Topological-collaborative approach for disambiguating authors' names in collaborative networks. SCIENTOMETRICS, v. 102, n. 1, p. 465-485, . (11/50761-2, 13/06717-4, 10/00927-9)
AMANCIO, DIEGO R.; SILVA, FILIPI N.; COSTA, LUCIANO DA F.. Concentric network symmetry grasps authors' styles in word adjacency networks. EPL, v. 110, n. 6, . (14/20830-0, 11/50761-2)
FUJITA, ANDRE; TAKAHASHI, DANIEL Y.; PATRIOTA, ALEXANDRE G.; SATO, JOAO R.. A non-parametric statistical test to compare clusters with applications in functional magnetic resonance imaging data. STATISTICS IN MEDICINE, v. 33, n. 28, p. 4949-4962, . (12/21788-2, 11/50761-2, 14/09576-5, 13/10498-6)
AZEVEDO, HATYLAS; FUJITA, ANDRE; BANDO, SILVIA YUMI; IAMASHITA, PRISCILA; MOREIRA-FILHO, CARLOS ALBERTO. Transcriptional Network Analysis Reveals that AT1 and AT2 Angiotensin II Receptors Are Both Involved in the Regulation of Genes Essential for Glioma Progression. PLoS One, v. 9, n. 11, . (05/56446-0, 11/07762-8, 11/50761-2, 09/53443-1)
SANTOS, SUZANA DE SIQUEIRA; TAKAHASHI, DANIEL YASUMASA; NAKATA, ASUKA; FUJITA, ANDRE. A comparative study of statistical methods used to identify dependencies between gene expression signals. BRIEFINGS IN BIOINFORMATICS, v. 15, n. 6, p. 906-918, . (13/03447-6, 12/25417-9, 11/07762-8, 11/50761-2)
COMIN, CESAR HENRIQUE; XU, XIAOYIN; WANG, YAMING; COSTA, LUCIANO DA FONTOURA; YANG, ZHONG. An image processing approach to analyze morphological features of microscopic images of muscle fibers. Computerized Medical Imaging and Graphics, v. 38, n. 8, p. 803-814, . (11/22639-8, 11/50761-2)
DE ARRUDA, GUILHERME FERRAZ; COSTA, LUCIANO DA FONTOURA; SCHUBERT, DIRK; RODRIGUES, FRANCISCO A.. Structure and dynamics of functional networks in child-onset schizophrenia. CLINICAL NEUROPHYSIOLOGY, v. 125, n. 8, p. 1589-1595, . (10/19440-2, 11/50761-2)
FONSECA, MONIQUE T.; RODRIGUES, ABNER C.; CEZAR, LUANA C.; FUJITA, ANDRE; SORIANO, FRANCISCO G.; STEINER, ALEXANDRE A.. Spontaneous hypothermia in human sepsis is a transient, self-limiting, and nonterminal response. Journal of Applied Physiology, v. 120, n. 12, p. 1394-1401, . (09/15530-0, 13/00506-1, 12/03831-8, 11/50761-2, 14/09576-5)
SILVA, FILIPI N.; AMANCIO, DIEGO R.; BARDOSOVA, MARIA; COSTA, LUCIANO DA F.; OLIVEIRA, JR., OSVALDO N.. Using network science and text analytics to produce surveys in a scientific topic. Journal of Informetrics, v. 10, n. 2, p. 487-502, . (14/20830-0, 11/50761-2, 15/08003-4)
KOSER, DAVID E.; THOMPSON, AMELIA J.; FOSTER, SARAH K.; DWIVEDY, ASHA; PILLAI, EVA K.; SHERIDAN, GRAHAM K.; SVOBODA, HANNO; VIANA, MATHEUS; COSTA, LUCIANO DA F.; GUCK, JOCHEN; et al. Mechanosensing is critical for axon growth in the developing brain. NATURE NEUROSCIENCE, v. 19, n. 12, p. 1592-1598, . (11/50761-2)
OZAHATA, MINA CINTHO; SABINO, ESTER CERDEIRA; DIAZ, RICARDO SOBHIE; CESAR-, JR., ROBERTO M.; FERREIRA, JOAO EDUARDO. Data-intensive analysis of HIV mutations. BMC Bioinformatics, v. 16, . (11/50761-2)
AZEVEDO, HATYLAS; RENESTO, PAULO GUILHERME; CHINEN, ROGERIO; NAKA, ERIKA; CARVALHO DE MATOS, ANA CRISTINA; CENEDEZE, MARCOS ANTONIO; MOREIRA-FILHO, CARLOS ALBERTO; SARAIVA CAMARA, NIELS OLSEN; PACHECO-SILVA, ALVARO. Intragraft transcriptional profiling of renal transplant patients with tubular dysfunction reveals mechanisms underlying graft injury and recovery. HUMAN GENOMICS, v. 10, . (11/50761-2, 12/02270-2, 09/53443-1)
SILVA, FILIPI N.; COMIN, CESAR H.; PERON, THOMAS K. D. M.; RODRIGUES, FRANCISCO A.; YE, CHENG; WILSON, RICHARD C.; HANCOCK, EDWIN R.; COSTA, LUCIANO DA F.. Concentric network symmetry. INFORMATION SCIENCES, v. 333, p. 61-80, . (13/26416-9, 11/22639-8, 12/22160-7, 12/50986-7, 11/50761-2)
MATUSZEWSKI, DAMIAN J.; CESAR, JR., ROBERTO M.; STRICKLER, J. RUDI; BALDASSO, LUIS F.; LOPES, RUBENS M.. Visual rhythm for particle analysis in sample-in-flow systems: Application for continuous plankton monitoring. LIMNOLOGY AND OCEANOGRAPHY-METHODS, v. 13, n. 12, p. 687-696, . (11/50761-2)
LIMA, WANIA REZENDE; MARTINS, DAVID CORREA; PARREIRA, KLEBER SIMONIO; SCARPELLI, PEDRO; DE MORAES, MIRIAM SANTOS; TOPALIS, PANTELIS; HASHIMOTO, RONALDO FUMIO; GARCIA, CELIA R. S.. Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif. ONCOTARGET, v. 8, n. 69, p. 113987-114001, . (15/01587-0, 11/51295-5, 11/50761-2)
SATO, JOAO RICARDO; BALARDIN, JOANA; VIDAL, MACIEL CALEBE; FUJITA, ANDRE. Identification of segregated regions in the functional brain connectome of autistic patients by a combination of fuzzy spectral clustering and entropy analysis. JOURNAL OF PSYCHIATRY & NEUROSCIENCE, v. 41, n. 2, p. 124-132, . (14/09576-5, 11/50761-2)
DE ARRUDA, HENRIQUE F.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Using complex networks for text classification: Discriminating informative and imaginative documents. EPL, v. 113, n. 2, . (14/20830-0, 12/50986-7, 11/50761-2)
CRISTINO, A. S.; WILLIAMS, S. M.; HAWI, Z.; AN, J-Y; BELLGROVE, M. A.; SCHWARTZ, C. E.; COSTA, L. DA F.; CLAUDIANOS, C.. Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system. MOLECULAR PSYCHIATRY, v. 19, n. 3, p. 294-301, . (11/50761-2)
DIAS PEDRO, RICARDO WANDRE; NUNES, FATIMA L. S.; MACHADO-LIMA, ARIANE. Using Grammars for Pattern Recognition in Images: A Systematic Review. ACM COMPUTING SURVEYS, v. 46, n. 2, . (11/50761-2, 10/15691-0)
AMANCIO, DIEGO R.; ALTMANN, EDUARDO G.; RYBSKI, DIEGO; OLIVEIRA, JR., OSVALDO N.; COSTA, LUCIANO DA F.. Probing the Statistical Properties of Unknown Texts: Application to the Voynich Manuscript. PLoS One, v. 8, n. 7, . (11/50761-2, 10/00927-9)
MANSILLA, LUCY A. C.; MIRANDA, PAULO A. V.; IEEE. Oriented Image Foresting Transform Segmentation: Connectivity Constraints with Adjustable Width. 2016 29TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (11/50761-2)
CASTANEDA LEON, LEISSI M.; MIRANDA, PAULO A. V.; IEEE. Multi-Object Segmentation by Hierarchical Layered Oriented Image Foresting Transform. 2017 30TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (14/50937-1, 16/21591-5, 11/50761-2)
SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 15-pg., . (18/09125-4, 15/22308-2, 17/09280-7, 13/07375-0, 15/18942-8, 11/50761-2, 15/08003-4)
DIAS PEDRO, RICARDO WANDRE; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Towards an approach using grammars for automatic classification of masses in mammograms. COMPUTATIONAL INTELLIGENCE, v. 37, n. 4, SI, p. 1515-1544, . (11/50761-2)
OLIVEIRA, JESSICA S.; FRANCO, FELIPE O.; REVERS, MIRIAN C.; SILVA, ANDREIA F.; PORTOLESE, JOANA; BRENTANI, HELENA; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.. Computer-aided autism diagnosis based on visual attention models using eye tracking. SCIENTIFIC REPORTS, v. 11, n. 1, . (11/50761-2, 14/50889-7, 20/01992-0)
BEJAR, HANS H. C.; CAPPABIANCO, FABIO A. M.; MIRANDA, PAULO A. V.; BATTIATO, S; GALLO, G; SCHETTINI, R; STANCO, F. Efficient Image Segmentation in Graphs with Localized Curvilinear Features. IMAGE ANALYSIS AND PROCESSING,(ICIAP 2017), PT I, v. 10484, p. 11-pg., . (16/21591-5, 11/50761-2, 14/12236-1)
MOREIRA TAVARES, ANDERSON CARLOS; VECHIATTO MIRANDA, PAULO ANDRE; SPINA, THIAGO VALLIN; FALCAO, ALEXANDRE XAVIER; ANGULO, J; VELASCOFORERO, S; MEYER, F. A Supervoxel-Based Solution to Resume Segmentation for Interactive Correction by Differential Image-Foresting Transforms. MATHEMATICAL MORPHOLOGY AND ITS APPLICATIONS TO SIGNAL AND IMAGE PROCESSING (ISMM 2017), v. 10225, p. 12-pg., . (16/11853-2, 15/09446-7, 11/50761-2, 14/12236-1)
CONDORI, MARCOS A. T.; CAPPABIANCO, FABIO A. M.; FALCAO, ALEXANDRE X.; MIRANDA, PAULO A. V.; IEEE. Extending the Differential Image Foresting Transform to Root-based Path-cost Functions with Application to Superpixel Segmentation. 2017 30TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., . (16/21591-5, 11/50761-2)
CCACYAHUILLCA BEJAR, HANS HARLEY; MIRANDA, PAULO AV. Oriented relative fuzzy connectedness: theory, algorithms, and its applications in hybrid image segmentation methods. EURASIP JOURNAL ON IMAGE AND VIDEO PROCESSING, v. N/A, p. 15-pg., . (11/50761-2)
TRAVIESO, G.; RUGGIERO, C. A.; BRUNO, O. M.; COSTA, L. DA F.. Predicting efficiency in master-slave grid computing systems. JOURNAL OF COMPLEX NETWORKS, v. 1, n. 1, p. 9-pg., . (11/01523-1, 03/08269-7, 11/50761-2)
YE, CHENG; WILSON, RICHARD C.; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HANCOCK, EDWIN R.. Approximate von Neumann entropy for directed graphs. PHYSICAL REVIEW E, v. 89, n. 5, p. 12-pg., . (11/22639-8, 11/50761-2, 12/50986-7)
HIRAMA, RODRIGO S.; PEDRO, RICARDO W. D.; GRACILIANO, VINICIUS S. K.; MACHADO-LIMA, ARIANE; NUNES, FATIMA L. S.; PAIVA, AC; CONCI, A; BRAZ, G; ALMEIDA, JDS; FERNANDES, LAF. Evaluating the impact of polygonal representations on mass classification. PROCEEDINGS OF THE 2020 INTERNATIONAL CONFERENCE ON SYSTEMS, SIGNALS AND IMAGE PROCESSING (IWSSIP), 27TH EDITION, v. N/A, p. 6-pg., . (11/50761-2)
MENDEZ-BERMUDEZ, J. A.; FERRAZ DE ARRUDA, GUILHERME; RODRIGUES, FRANCISCO A.; MORENO, YAMIR. Scaling properties of multilayer random networks. PHYSICAL REVIEW E, v. 96, n. 1, p. 8-pg., . (11/50761-2, 13/26416-9, 12/25219-2)
AMANCIO, DIEGO R.; OLIVEIRA, OSVALDO N., JR.; COSTA, LUCIANO DA F.. A decaying factor accounts for contained activity in neuronal networks with no need of hierarchical or modular organization. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. N/A, p. 12-pg., . (10/00927-9, 11/50761-2)
SOUZA, GLAUCIA MENDES; VAN SLUYS, MARIE-ANNE; LEMBKE, CAROLINA GIMILIANI; LEE, HAYAN; MARGARIDO, GABRIEL RODRIGUES ALVES; HOTTA, CARLOS TAKESHI; GAIARSA, JONAS WEISSMANN; DINIZ, AUGUSTO LIMA; OLIVEIRA, MAURO DE MEDEIROS; FERREIRA, SAVIO DE SIQUEIRA; et al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GIGASCIENCE, v. 8, n. 12, p. 18-pg., . (14/50921-8, 17/02842-0, 08/52074-0, 15/22993-7, 08/52146-0, 13/18322-4, 12/51062-3, 13/07467-1, 17/02270-6, 11/50761-2, 13/23048-9, 16/06917-1, 15/15346-5, 16/17545-8)
MONTOYA CUBAS, CARLOS FERNANDO; MARTINS-JR, DAVID CORREA JR; SANTOS, CARLOS SILVA; BARRERA, JUNIOR. Linear grouping of predictor instances to infer gene networks. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, v. 4, n. 1, p. 17-pg., . (11/50761-2)